PDB entry 2ygm

View 2ygm on RCSB PDB site
Description: the x-ray crystal structure of tandem cbm51 modules of sp3gh98, the family 98 glycoside hydrolase from streptococcus pneumoniae sp3-bs71, in complex with the blood group b antigen
Deposited on 2011-04-19, released 2011-06-22
The last revision was dated 2021-02-17, with a file datestamp of 2021-02-12.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: blood group a-and b-cleaving endo-beta-galactosidase
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:406556]
    Database cross-references and differences (RAF-indexed):
    • Uniprot C1CB04 (6-End)
      • expression tag (2-5)
  • Chain 'B':
    Compound: blood group a-and b-cleaving endo-beta-galactosidase
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:406556]
    Database cross-references and differences (RAF-indexed):
    • Uniprot C1CB04 (6-End)
      • expression tag (1-5)
  • Heterogens: CA, NA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2ygmA (A:)
gshmastylsdmdwssathgdidktktvqkdapfttgnkgehtkislltsddkvkyfdkg
igtvadspsvisydisgqgfekfetyigidqsanssrsdhavvdrieieidgkvvysssv
tnpegfryntqaqfisvtipqnakkislksfagehtwgdevvfadakliktvstqtitpd
llnkginggvylsdlewvdathgdddksktvqkdkpftpgnngsnnkikllidgkevefn
kglgtvasnpssikydvsganvtrfisyvgidrsanhlnsdyadiqkfevvadgkviyss
dskypkgikydtsaflvdveipkdtqtielksysgkhtwadelvlggalfmang

    Sequence, based on observed residues (ATOM records):
    >2ygmA (A:)
hmastylsdmdwssathgdidktktvqkdapfttgnkgehtkislltsddkvkyfdkgig
tvadspsvisydisgqgfekfetyigidqsanssrsdhavvdrieieidgkvvysssvtn
pegfryntqaqfisvtipqnakkislksfagehtwgdevvfadakliktvstqtitpdll
nkginggvylsdlewvdathgdddksktvqkdkpftpgnngsnnkikllidgkevefnkg
lgtvasnpssikydvsganvtrfisyvgidrsanhlnsdyadiqkfevvadgkviyssds
kypkgikydtsaflvdveipkdtqtielksysgkhtwadelvlggalfman

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2ygmB (B:)
gshmastylsdmdwssathgdidktktvqkdapfttgnkgehtkislltsddkvkyfdkg
igtvadspsvisydisgqgfekfetyigidqsanssrsdhavvdrieieidgkvvysssv
tnpegfryntqaqfisvtipqnakkislksfagehtwgdevvfadakliktvstqtitpd
llnkginggvylsdlewvdathgdddksktvqkdkpftpgnngsnnkikllidgkevefn
kglgtvasnpssikydvsganvtrfisyvgidrsanhlnsdyadiqkfevvadgkviyss
dskypkgikydtsaflvdveipkdtqtielksysgkhtwadelvlggalfmang

    Sequence, based on observed residues (ATOM records):
    >2ygmB (B:)
shmastylsdmdwssathgdidktktvqkdapfttgnkgehtkislltsddkvkyfdkgi
gtvadspsvisydisgqgfekfetyigidqsanssrsdhavvdrieieidgkvvysssvt
npegfryntqaqfisvtipqnakkislksfagehtwgdevvfadakliktvstqtitpdl
lnkginggvylsdlewvdathgdddksktvqkdkpftpgnngsnnkikllidgkevefnk
glgtvasnpssikydvsganvtrfisyvgidrsanhlnsdyadiqkfevvadgkviyssd
skypkgikydtsaflvdveipkdtqtielksysgkhtwadelvlggalfman