PDB entry 2yg8

View 2yg8 on RCSB PDB site
Description: structure of an unusual 3-methyladenine dna glycosylase ii (alka) from deinococcus radiodurans
Deposited on 2011-04-11, released 2011-04-20
The last revision was dated 2018-12-05, with a file datestamp of 2018-11-30.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA-3-methyladenine glycosidase II, putative
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: DR_2584
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: DNA-3-methyladenine glycosidase II, putative
    Species: Deinococcus radiodurans [TaxId:1299]
    Gene: DR_2584
    Database cross-references and differences (RAF-indexed):
  • Heterogens: CL, GOL, MES, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2yg8A (A:)
mrggalhqnrrvtlpsvplpavlppltdhagavahlsrdpvlaqvtslcgelpvlaptpd
pfgrlvrsvagqqlsvkaaqaiygrleglpggvvpaallkvsgddlrgvglswakvrtvq
aaaaaavsgqidfahlsgqpdelviaelvqlpgigrwtaemfllfalarpdvfssgdlal
rqgverlypgedwrdvtarwapyrslasrylwansarmqaggapl

    Sequence, based on observed residues (ATOM records):
    >2yg8A (A:)
lpavlppltdhagavahlsrdpvlaqvtslcgelpvlaptpdpfgrlvrsvagqqlsvka
aqaiygrleglpggvvpaallkvsgddlrgvglswakvrtvqaaaaaavsgqidfahlsg
qpdelviaelvqlpgigrwtaemfllfalarpdvfssgdlalrqgverlypgedwrdvta
rwapyrslasrylwansarmqaggapl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2yg8B (B:)
mrggalhqnrrvtlpsvplpavlppltdhagavahlsrdpvlaqvtslcgelpvlaptpd
pfgrlvrsvagqqlsvkaaqaiygrleglpggvvpaallkvsgddlrgvglswakvrtvq
aaaaaavsgqidfahlsgqpdelviaelvqlpgigrwtaemfllfalarpdvfssgdlal
rqgverlypgedwrdvtarwapyrslasrylwansarmqaggapl

    Sequence, based on observed residues (ATOM records):
    >2yg8B (B:)
pavlppltdhagavahlsrdpvlaqvtslcgelpvlaptpdpfgrlvrsvagqqlsvkaa
qaiygrleglpggvvpaallkvsgddlrgvglswakvrtvqaaaaaavsgqidfahlsgq
pdelviaelvqlpgigrwtaemfllfalarpdvfssgdlalrqgverlypgedwrdvtar
wapyrslasrylwansarmqaggapl