PDB entry 2yg4

View 2yg4 on RCSB PDB site
Description: structure-based redesign of cofactor binding in putrescine oxidase: wild type bound to putrescine
Deposited on 2011-04-11, released 2011-05-18
The last revision was dated 2011-05-18, with a file datestamp of 2011-05-13.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.15886
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putrescine oxidase
    Species: Rhodococcus erythropolis [TaxId:1833]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Putrescine oxidase
    Species: Rhodococcus erythropolis [TaxId:1833]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: FAD, 4HA, GOL, SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2yg4A (A:)
    vptlqrdvaivgagpsglaaatalrkaglsvavieardrvggrtwtdtidgavleiggqw
    vspdqtalislldelglktferyregesvyissagertrytgdsfptnettkkemdrlid
    emddlaaqigaeepwahplardldtvsfkqwlinqsddaeardniglfiaggmltkpahs
    fsalqavlmaasagsfshlvdedfildkrviggmqqvsirmaealgddvflnapvrtvkw
    nesgatvladgdirveasrvilavppnlysrisydpplprrqhqmhqhqslglvikvhav
    yetpfwredglsgtgfgasevvqevydntnheddrgtlvafvsdekadamfelsaeerka
    tilaslarylgpkaeepvvyyesdwgseewtrgayaasfdlgglhrygadsrtpvgpihf
    scsdiaaegyqhvdgavrmgqrtaadiiarska
    

    Sequence, based on observed residues (ATOM records):
    >2yg4A (A:)
    ptlqrdvaivgagpsglaaatalrkaglsvavieardrvggrtwtdtidgavleiggqwv
    spdqtalislldelglktferyregesvyissagertrytgdsfptnettkkemdrlide
    mddlaaqigaeepwahplardldtvsfkqwlinqsddaeardniglfiaggmltkpahsf
    salqavlmaasagsfshlvdedfildkrviggmqqvsirmaealgddvflnapvrtvkwn
    esgatvladgdirveasrvilavppnlysrisydpplprrqhqmhqhqslglvikvhavy
    etpfwredglsgtgfgasevvqevydntnheddrgtlvafvsdekadamfelsaeerkat
    ilaslarylgpkaeepvvyyesdwgseewtrgayaasfdlgglhrygadsrtpvgpihfs
    csdiaaegyqhvdgavrmgqrtaadiiar
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2yg4B (B:)
    vptlqrdvaivgagpsglaaatalrkaglsvavieardrvggrtwtdtidgavleiggqw
    vspdqtalislldelglktferyregesvyissagertrytgdsfptnettkkemdrlid
    emddlaaqigaeepwahplardldtvsfkqwlinqsddaeardniglfiaggmltkpahs
    fsalqavlmaasagsfshlvdedfildkrviggmqqvsirmaealgddvflnapvrtvkw
    nesgatvladgdirveasrvilavppnlysrisydpplprrqhqmhqhqslglvikvhav
    yetpfwredglsgtgfgasevvqevydntnheddrgtlvafvsdekadamfelsaeerka
    tilaslarylgpkaeepvvyyesdwgseewtrgayaasfdlgglhrygadsrtpvgpihf
    scsdiaaegyqhvdgavrmgqrtaadiiarska
    

    Sequence, based on observed residues (ATOM records):
    >2yg4B (B:)
    ptlqrdvaivgagpsglaaatalrkaglsvavieardrvggrtwtdtidgavleiggqwv
    spdqtalislldelglktferyregesvyissagertrytgdsfptnettkkemdrlide
    mddlaaqigaeepwahplardldtvsfkqwlinqsddaeardniglfiaggmltkpahsf
    salqavlmaasagsfshlvdedfildkrviggmqqvsirmaealgddvflnapvrtvkwn
    esgatvladgdirveasrvilavppnlysrisydpplprrqhqmhqhqslglvikvhavy
    etpfwredglsgtgfgasevvqevydntnheddrgtlvafvsdekadamfelsaeerkat
    ilaslarylgpkaeepvvyyesdwgseewtrgayaasfdlgglhrygadsrtpvgpihfs
    csdiaaegyqhvdgavrmgqrtaadiiars