PDB entry 2yfp

View 2yfp on RCSB PDB site
Description: structure of yellow-emission variant of gfp
Class: photosynthesis
Keywords: green fluorescent protein, yellow-emission variant, bioluminescence, photoactive protein, fluorescent tag, photosynthesis
Deposited on 1998-08-17, released 1999-01-13
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-05-19, with a file datestamp of 2009-05-15.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.161
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein (green fluorescent protein)
    Species: Aequorea victoria [TaxId:6100]
    Gene: GFP
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q93125
      • chromophore, see remark 999 (65)
      • conflict (202)
    Domains in SCOPe 2.06: d2yfpa_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2yfpA (A:)
mskgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptl
vttfgyglqcfarypdhmkrhdffksampegyvqertiffkddgnyktraevkfegdtlv
nrielkgidfkedgnilghkleynynsgnvyimadkqkngikvnfkirhniedgsvqlad
hyqqntpigdgpvllpdnhylsyqsalskdpnekrdhmvllefvtaagithgmdelyk

    Sequence, based on observed residues (ATOM records): (download) 
    >2yfpA (A:)
skgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptlv
ttfgyglqcfarypdhmkrhdffksampegyvqertiffkddgnyktraevkfegdtlvn
rielkgidfkedgnilghkleynynsgnvyimadkqkngikvnfkirhniedgsvqladh
yqqntpigdgpvllpdnhylsyqsalskdpnekrdhmvllefvtaagi