PDB entry 2yfn

View 2yfn on RCSB PDB site
Description: galactosidase domain of alpha-galactosidase-sucrose kinase, agask
Deposited on 2011-04-07, released 2011-09-28
The last revision was dated 2011-12-07, with a file datestamp of 2011-12-02.
Experiment type: XRAY
Resolution: 1.45 Å
R-factor: 0.13105
AEROSPACI score: 0.71 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: alpha-galactosidase-sucrose kinase agask
    Species: RUMINOCOCCUS GNAVUS E1 [TaxId:935582]
    Database cross-references and differences (RAF-indexed):
    • PDB 2YFN (Start-719)
  • Heterogens: GOL, EDO, PO4, MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2yfnA (A:)
    maiiynpnkkiftlhtahttyqmqvdplgyllhlyygektnssmdyvltyadrgfsgnpy
    aagmdrtysldalpqeypslgtgdyrnialniknekgvesadllfksyeirngkyrlqgl
    pavwadekeaqtleivladenaqvevhllygvleendvitrsvrikntgtgqitiekaaa
    acldfvqgefdvlrfygkhamernlertplghgtiafgsrrgtsshqynpavilaekgtt
    etagscygmlfvysgnfsceaekdqfnqtrlllglneelfsyplasgetftvpevilsys
    aeglsalsqqyhncirnhvcrskyvhmqrpvlinsweaayfdftgdtivdlakeaaslgi
    dmvvmddgwfgkrnddnsslgdwqvnetklggslaelitrvheqgmkfgiwiepemined
    sdlyrahpdwairiqgkkpvrsrnqllldfsrkevrdcvfdqicvvldqgkidyvkwdmn
    rsmadvyagnlsydyvlgvydfmerlcsrypdlllegcsggggrfdagmlyyspqiwcsd
    ntdainrtriqygtsffypvsamgahvsavpnhqtgrvtsfhtrgvtamagtfgyelnpa
    llsdeekqqireqiktykkyetlinegtywrlsdpftdeiaawmsvseeqdhalvsvvrl
    maeanqatvyvrlrglkpdavyleeqsgrqysgaalmhagiplppfteeyeayqfaftel
    

    Sequence, based on observed residues (ATOM records):
    >2yfnA (A:)
    aiiynpnkkiftlhtahttyqmqvdplgyllhlyygektnssmdyvltyadrgfsgnpya
    agmdrtysldalpqeypslgtgdyrnialniknekgvesadllfksyeirngkyrlqglp
    avwadekeaqtleivladenaqvevhllygvleendvitrsvrikntgtgqitiekaaaa
    cldfvqgefdvlrfygkhamernlertplghgtiafgsrrgtsshqynpavilaekgtte
    tagscygmlfvysgnfsceaekdqfnqtrlllglneelfsyplasgetftvpevilsysa
    eglsalsqqyhncirnhvcrskyvhmqrpvlinsweaayfdftgdtivdlakeaaslgid
    mvvmddgwfgkrnddnsslgdwqvnetklggslaelitrvheqgmkfgiwiepemineds
    dlyrahpdwairiqgkkpvrsrnqllldfsrkevrdcvfdqicvvldqgkidyvkwdmnr
    smadvyagnlsydyvlgvydfmerlcsrypdlllegcsggggrfdagmlyyspqiwcsdn
    tdainrtriqygtsffypvsamgahvsavpnhqtgrvtsfhtrgvtamagtfgyelnpal
    lsdeekqqireqiktykkyetlinegtywrlsdpftdeiaawmsvseeqdhalvsvvrlm
    aeanqatvyvrlrglkpdavyleeqsgrqysgaalmhagiplppfteeyeayqfaftel