PDB entry 2yfg

View 2yfg on RCSB PDB site
Description: Structural Determinants of Cofactor Specificity and Domain Flexibility in Bacterial Glutamate Dehydrogenases
Class: oxidoreductase
Keywords: oxidoreductase
Deposited on 2011-04-05, released 2012-03-28
The last revision prior to the SCOPe 2.07 freeze date was dated 2013-06-19, with a file datestamp of 2013-06-14.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.176
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: NADP-specific glutamate dehydrogenase
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2yfga1, d2yfga2
  • Chain 'B':
    Compound: NADP-specific glutamate dehydrogenase
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2yfgb1, d2yfgb2
  • Chain 'C':
    Compound: NADP-specific glutamate dehydrogenase
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2yfgc1, d2yfgc2
  • Chain 'D':
    Compound: NADP-specific glutamate dehydrogenase
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2yfgd1, d2yfgd2
  • Chain 'E':
    Compound: NADP-specific glutamate dehydrogenase
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00370 (Start-446)
      • conflict (266)
    Domains in SCOPe 2.07: d2yfge1, d2yfge2
  • Chain 'F':
    Compound: NADP-specific glutamate dehydrogenase
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2yfgf1, d2yfgf2
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2yfgA (A:)
mdqtyslesflnhvqkrdpnqtefaqavrevmttlwpfleqnpkyrqmsllerlveperv
iqfrvvwvddrnqiqvnrawrvqfssaigpykggmrfhpsvnlsilkflgfeqtfknalt
tlpmgggkggsdfdpkgksegevmrfcqalmtelyrhlgadtdvpagdigvggrevgfma
gmmkklsnntacvftgkglsfggslirpeatgyglvyfteamlkrhgmgfegmrvsvsgs
gnvaqyaiekamefgarvitasdssgtvvdesgftkeklarlieikasrdgrvadyakef
glvylegqqpwslpvdialpcatqneldvdaahqliangvkavaeganmpttieatelfq
qagvlfapgkaanaggvatsglemaqnaarlgwkaekvdarlhhimldihhacvehggeg
eqtnyvqganiagfvkvadamlaqgvi

    Sequence, based on observed residues (ATOM records): (download) 
    >2yfgA (A:)
slesflnhvqkrdpnqtefaqavrevmttlwpfleqnpkyrqmsllerlveperviqfrv
vwvddrnqiqvnrawrvqfssaigpykggmrfhpsvnlsilkflgfeqtfknalttlpmg
ggkggsdfdpkgksegevmrfcqalmtelyrhlgadtdvpagdigvggrevgfmagmmkk
lsnntacvftgkglsfggslirpeatgyglvyfteamlkrhgmgfegmrvsvsgsgnvaq
yaiekamefgarvitasdssgtvvdesgftkeklarlieikasrdgrvadyakefglvyl
egqqpwslpvdialpcatqneldvdaahqliangvkavaeganmpttieatelfqqagvl
fapgkaanaggvatsglemaqnaarlgwkaekvdarlhhimldihhacvehggegeqtny
vqganiagfvkvadamlaqgvi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2yfgB (B:)
mdqtyslesflnhvqkrdpnqtefaqavrevmttlwpfleqnpkyrqmsllerlveperv
iqfrvvwvddrnqiqvnrawrvqfssaigpykggmrfhpsvnlsilkflgfeqtfknalt
tlpmgggkggsdfdpkgksegevmrfcqalmtelyrhlgadtdvpagdigvggrevgfma
gmmkklsnntacvftgkglsfggslirpeatgyglvyfteamlkrhgmgfegmrvsvsgs
gnvaqyaiekamefgarvitasdssgtvvdesgftkeklarlieikasrdgrvadyakef
glvylegqqpwslpvdialpcatqneldvdaahqliangvkavaeganmpttieatelfq
qagvlfapgkaanaggvatsglemaqnaarlgwkaekvdarlhhimldihhacvehggeg
eqtnyvqganiagfvkvadamlaqgvi

    Sequence, based on observed residues (ATOM records): (download) 
    >2yfgB (B:)
slesflnhvqkrdpnqtefaqavrevmttlwpfleqnpkyrqmsllerlveperviqfrv
vwvddrnqiqvnrawrvqfssaigpykggmrfhpsvnlsilkflgfeqtfknalttlpmg
ggkggsdfdpkgksegevmrfcqalmtelyrhlgadtdvpagdigvggrevgfmagmmkk
lsnntacvftgkglsfggslirpeatgyglvyfteamlkrhgmgfegmrvsvsgsgnvaq
yaiekamefgarvitasdssgtvvdesgftkeklarlieikasrdgrvadyakefglvyl
egqqpwslpvdialpcatqneldvdaahqliangvkavaeganmpttieatelfqqagvl
fapgkaanaggvatsglemaqnaarlgwkaekvdarlhhimldihhacvehggegeqtny
vqganiagfvkvadamlaqgvi

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2yfgC (C:)
mdqtyslesflnhvqkrdpnqtefaqavrevmttlwpfleqnpkyrqmsllerlveperv
iqfrvvwvddrnqiqvnrawrvqfssaigpykggmrfhpsvnlsilkflgfeqtfknalt
tlpmgggkggsdfdpkgksegevmrfcqalmtelyrhlgadtdvpagdigvggrevgfma
gmmkklsnntacvftgkglsfggslirpeatgyglvyfteamlkrhgmgfegmrvsvsgs
gnvaqyaiekamefgarvitasdssgtvvdesgftkeklarlieikasrdgrvadyakef
glvylegqqpwslpvdialpcatqneldvdaahqliangvkavaeganmpttieatelfq
qagvlfapgkaanaggvatsglemaqnaarlgwkaekvdarlhhimldihhacvehggeg
eqtnyvqganiagfvkvadamlaqgvi

    Sequence, based on observed residues (ATOM records): (download) 
    >2yfgC (C:)
slesflnhvqkrdpnqtefaqavrevmttlwpfleqnpkyrqmsllerlveperviqfrv
vwvddrnqiqvnrawrvqfssaigpykggmrfhpsvnlsilkflgfeqtfknalttlpmg
ggkggsdfdpkgksegevmrfcqalmtelyrhlgadtdvpagdigvggrevgfmagmmkk
lsnntacvftgkglsfggslirpeatgyglvyfteamlkrhgmgfegmrvsvsgsgnvaq
yaiekamefgarvitasdssgtvvdesgftkeklarlieikasrdgrvadyakefglvyl
egqqpwslpvdialpcatqneldvdaahqliangvkavaeganmpttieatelfqqagvl
fapgkaanaggvatsglemaqnaarlgwkaekvdarlhhimldihhacvehggegeqtny
vqganiagfvkvadamlaqgvi

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2yfgD (D:)
mdqtyslesflnhvqkrdpnqtefaqavrevmttlwpfleqnpkyrqmsllerlveperv
iqfrvvwvddrnqiqvnrawrvqfssaigpykggmrfhpsvnlsilkflgfeqtfknalt
tlpmgggkggsdfdpkgksegevmrfcqalmtelyrhlgadtdvpagdigvggrevgfma
gmmkklsnntacvftgkglsfggslirpeatgyglvyfteamlkrhgmgfegmrvsvsgs
gnvaqyaiekamefgarvitasdssgtvvdesgftkeklarlieikasrdgrvadyakef
glvylegqqpwslpvdialpcatqneldvdaahqliangvkavaeganmpttieatelfq
qagvlfapgkaanaggvatsglemaqnaarlgwkaekvdarlhhimldihhacvehggeg
eqtnyvqganiagfvkvadamlaqgvi

    Sequence, based on observed residues (ATOM records): (download) 
    >2yfgD (D:)
slesflnhvqkrdpnqtefaqavrevmttlwpfleqnpkyrqmsllerlveperviqfrv
vwvddrnqiqvnrawrvqfssaigpykggmrfhpsvnlsilkflgfeqtfknalttlpmg
ggkggsdfdpkgksegevmrfcqalmtelyrhlgadtdvpagdigvggrevgfmagmmkk
lsnntacvftgkglsfggslirpeatgyglvyfteamlkrhgmgfegmrvsvsgsgnvaq
yaiekamefgarvitasdssgtvvdesgftkeklarlieikasrdgrvadyakefglvyl
egqqpwslpvlpcatqneldvdaahqliangvkavaeganmpttieatelfqqagvlfap
gkaanaggvatsglemaqnaarlgwkaekvdarlhhimldihhacvehggegeqtnyvqg
aniagfvkvadamlaqgvi

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2yfgE (E:)
mdqtyslesflnhvqkrdpnqtefaqavrevmttlwpfleqnpkyrqmsllerlveperv
iqfrvvwvddrnqiqvnrawrvqfssaigpykggmrfhpsvnlsilkflgfeqtfknalt
tlpmgggkggsdfdpkgksegevmrfcqalmtelyrhlgadtdvpagdigvggrevgfma
gmmkklsnntacvftgkglsfggslirpeatgyglvyfteamlkrhgmgfegmrvsvsgs
gnvaqyaiekamefgarvitasdssglvvdesgftkeklarlieikasrdgrvadyakef
glvylegqqpwslpvdialpcatqneldvdaahqliangvkavaeganmpttieatelfq
qagvlfapgkaanaggvatsglemaqnaarlgwkaekvdarlhhimldihhacvehggeg
eqtnyvqganiagfvkvadamlaqgvi

    Sequence, based on observed residues (ATOM records): (download) 
    >2yfgE (E:)
slesflnhvqkrdpnqtefaqavrevmttlwpfleqnpkyrqmsllerlveperviqfrv
vwvddrnqiqvnrawrvqfssaigpykggmrfhpsvnlsilkflgfeqtfknalttlpmg
ggkggsdfdpkgksegevmrfcqalmtelyrhlgadtdvpagdigvggrevgfmagmmkk
lsnntacvftgkglsfggslirpeatgyglvyfteamlkrhgmgfegmrvsvsgsgnvaq
yaiekamefgarvitasdssglvvdesgftkeklarlieikasrdgrvadyakefglvyl
egqqpwslpvdialpcatqneldvdaahqliangvkavaeganmpttieatelfqqagvl
fapgkaanaggvatsglemaqnaarlgwkaekvdarlhhimldihhacvehggegeqtny
vqganiagfvkvadamlaqgvi

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2yfgF (F:)
mdqtyslesflnhvqkrdpnqtefaqavrevmttlwpfleqnpkyrqmsllerlveperv
iqfrvvwvddrnqiqvnrawrvqfssaigpykggmrfhpsvnlsilkflgfeqtfknalt
tlpmgggkggsdfdpkgksegevmrfcqalmtelyrhlgadtdvpagdigvggrevgfma
gmmkklsnntacvftgkglsfggslirpeatgyglvyfteamlkrhgmgfegmrvsvsgs
gnvaqyaiekamefgarvitasdssgtvvdesgftkeklarlieikasrdgrvadyakef
glvylegqqpwslpvdialpcatqneldvdaahqliangvkavaeganmpttieatelfq
qagvlfapgkaanaggvatsglemaqnaarlgwkaekvdarlhhimldihhacvehggeg
eqtnyvqganiagfvkvadamlaqgvi

    Sequence, based on observed residues (ATOM records): (download) 
    >2yfgF (F:)
slesflnhvqkrdpnqtefaqavrevmttlwpfleqnpkyrqmsllerlveperviqfrv
vwvddrnqiqvnrawrvqfssaigpykggmrfhpsvnlsilkflgfeqtfknalttlpmg
ggkggsdfdpkgksegevmrfcqalmtelyrhlgadtdvpagdigvggrevgfmagmmkk
lsnntacvftgkglsfggslirpeatgyglvyfteamlkrhgmgfegmrvsvsgsgnvaq
yaiekamefgarvitasdssgtvvdesgftkeklarlieikasrdgrvadyakefglvyl
egqqpwslpvdialpcatqneldvdaahqliangvkavaeganmpttieatelfqqagvl
fapgkaanaggvatsglemaqnaarlgwkaekvdarlhhimldihhacvehggegeqtny
vqganiagfvkvadamlaqgvi