PDB entry 2yfd

View 2yfd on RCSB PDB site
Description: structural and functional insights of dr2231 protein, the mazg-like nucleoside triphosphate pyrophosphohydrolase from deinococcus radiodurans, complexed with mg and dump
Deposited on 2011-04-05, released 2011-07-06
The last revision was dated 2017-01-25, with a file datestamp of 2017-01-20.
Experiment type: XRAY
Resolution: 1.77 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: mazg-like nucleoside triphosphate pyrophosphohydrolase
    Species: DEINOCOCCUS RADIODURANS [TaxId:243230]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: mazg-like nucleoside triphosphate pyrophosphohydrolase
    Species: DEINOCOCCUS RADIODURANS [TaxId:243230]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: mazg-like nucleoside triphosphate pyrophosphohydrolase
    Species: DEINOCOCCUS RADIODURANS [TaxId:243230]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: mazg-like nucleoside triphosphate pyrophosphohydrolase
    Species: DEINOCOCCUS RADIODURANS [TaxId:243230]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MG, UMP, CL, ACT, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2yfdA (A:)
gidpftmsdlpcpptnaerlhefhraigaatperptppppellrlrqtlldeesaevrae
idhllarqaagealsagdlaplaheladllyvtygaldqlgidadavfaevhranlskas
gprradgkqlkpegwrpadvrgvierlqhapadd

    Sequence, based on observed residues (ATOM records):
    >2yfdA (A:)
pptnaerlhefhraigatperptppppellrlrqtlldeesaevraeidhllarqaagea
lsagdlaplaheladllyvtygaldqlgidadavfaevhranlskasgprradgkqlkpe
gwrpadvrgvierlqhap

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2yfdB (B:)
gidpftmsdlpcpptnaerlhefhraigaatperptppppellrlrqtlldeesaevrae
idhllarqaagealsagdlaplaheladllyvtygaldqlgidadavfaevhranlskas
gprradgkqlkpegwrpadvrgvierlqhapadd

    Sequence, based on observed residues (ATOM records):
    >2yfdB (B:)
pptnaerlhefhraigaatperptppppellrlrqtlldeesaevraeidhllarqaage
alsagdlaplaheladllyvtygaldqlgidadavfaevhranlskasglkpegwrpadv
rgvierlqha

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2yfdC (C:)
gidpftmsdlpcpptnaerlhefhraigaatperptppppellrlrqtlldeesaevrae
idhllarqaagealsagdlaplaheladllyvtygaldqlgidadavfaevhranlskas
gprradgkqlkpegwrpadvrgvierlqhapadd

    Sequence, based on observed residues (ATOM records):
    >2yfdC (C:)
cpptnaerlhefhraigatperptppppellrlrqtlldeesaevraeidhllarqaage
alsagdlaplaheladllyvtygaldqlgidadavfaevhranlskasgprradgkqlkp
egwrpadvrgvierlqh

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2yfdD (D:)
gidpftmsdlpcpptnaerlhefhraigaatperptppppellrlrqtlldeesaevrae
idhllarqaagealsagdlaplaheladllyvtygaldqlgidadavfaevhranlskas
gprradgkqlkpegwrpadvrgvierlqhapadd

    Sequence, based on observed residues (ATOM records):
    >2yfdD (D:)
cpptnaerlhefhraigaatperptppppellrlrqtlldeesaevraeidhllarqaag
ealsagdlaplaheladllyvtygaldqlgidadavfaevhranlskasgkpegwrpadv
rgvierlqha