PDB entry 2yf6

View 2yf6 on RCSB PDB site
Description: complex of a b21 chicken MHC class I molecule and a 10mer chicken peptide
Class: immune system
Keywords: immune system, bf21, immune response, immunoglobulin domain, MHC I
Deposited on 2011-04-04, released 2011-04-20
Made obsolete by 4d0b on 2015-05-06

The last revision prior to the SCOPe 2.04 freeze date was dated 2011-04-20, with a file datestamp of 2011-04-15.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.2748
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Major histocompatibility complex class I glycoprotein haplotype B21
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q95601 (Start-290)
      • expression tag (291-297)
    Domains in SCOPe 2.04: d2yf6a1, d2yf6a2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2yf6b_
  • Chain 'C':
    Compound: peptide
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed):
    • PDB 2YF6 (0-9)
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2yf6A (A:)
    mgscgalglglllaavcgaaaelhtlryirtamtdpgpglpwfvdvgyvdgelfmhynst
    arravprtewiaantdqqywdretqivqgseqinrenldilrrrynqtggshtvqwmsgc
    diledgtirgyhqaaydgrdfvafdkgtmtltaavpeavptkrkweeggyaeglkqylee
    tcvewlrryveygkaelgrrerpevrvwgkeadgiltlscrahgfyprpivvswlkdgav
    rgqdaqsggivpngdgtyhtwvtidaqpgdgdkyqcrvehaslpqpglyswrsggglndi
    feaqkiewhensssvdklaaalehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >2yf6A (A:)
    elhtlryirtamtdpgpglpwfvdvgyvdgelfmhynstarravprtewiaantdqqywd
    retqivqgseqinrenldilrrrynqtggshtvqwmsgcdiledgtirgyhqaaydgrdf
    vafdkgtmtltaavpeavptkrkweeggyaeglkqyleetcvewlrryveygkaelgrre
    rpevrvwgkeadgiltlscrahgfyprpivvswlkdgavrgqdaqsggivpngdgtyhtw
    vtidaqpgdgdkyqcrvehaslpqpglyswrsgggln
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2yf6B (B:)
    dltpkvqvysrfpasagtknvlncfaagfhppkisitlmkdgvpmegaqysdmsfnddwt
    fqrlvhadftpssgstyackvehetlkepqvykwdpef
    

    Sequence, based on observed residues (ATOM records): (download)
    >2yf6B (B:)
    ltpkvqvysrfpasagtknvlncfaagfhppkisitlmkdgvpmegaqysdmsfnddwtf
    qrlvhadftpssgstyackvehetlkepqvykwdpef
    

  • Chain 'C':
    No sequence available.