PDB entry 2yf6

View 2yf6 on RCSB PDB site
Description: complex of a b21 chicken mhc class i molecule and a 10mer chicken peptide
Deposited on 2011-04-04, released 2011-04-20
Made obsolete by 4d0b on 2015-05-06

The last revision was dated 2015-05-06, with a file datestamp of 2015-05-01.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Major histocompatibility complex class I glycoprotein haplotype B21
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q95601 (Start-290)
      • expression tag (291-297)
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: peptide
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed):
    • PDB 2YF6 (0-9)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2yf6A (A:)
mgscgalglglllaavcgaaaelhtlryirtamtdpgpglpwfvdvgyvdgelfmhynst
arravprtewiaantdqqywdretqivqgseqinrenldilrrrynqtggshtvqwmsgc
diledgtirgyhqaaydgrdfvafdkgtmtltaavpeavptkrkweeggyaeglkqylee
tcvewlrryveygkaelgrrerpevrvwgkeadgiltlscrahgfyprpivvswlkdgav
rgqdaqsggivpngdgtyhtwvtidaqpgdgdkyqcrvehaslpqpglyswrsggglndi
feaqkiewhensssvdklaaalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >2yf6A (A:)
elhtlryirtamtdpgpglpwfvdvgyvdgelfmhynstarravprtewiaantdqqywd
retqivqgseqinrenldilrrrynqtggshtvqwmsgcdiledgtirgyhqaaydgrdf
vafdkgtmtltaavpeavptkrkweeggyaeglkqyleetcvewlrryveygkaelgrre
rpevrvwgkeadgiltlscrahgfyprpivvswlkdgavrgqdaqsggivpngdgtyhtw
vtidaqpgdgdkyqcrvehaslpqpglyswrsgggln

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2yf6B (B:)
dltpkvqvysrfpasagtknvlncfaagfhppkisitlmkdgvpmegaqysdmsfnddwt
fqrlvhadftpssgstyackvehetlkepqvykwdpef

    Sequence, based on observed residues (ATOM records):
    >2yf6B (B:)
ltpkvqvysrfpasagtknvlncfaagfhppkisitlmkdgvpmegaqysdmsfnddwtf
qrlvhadftpssgstyackvehetlkepqvykwdpef

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >2yf6C (C:)
tagqedydrl