PDB entry 2yf3

View 2yf3 on RCSB PDB site
Description: crystal structure of dr2231, the mazg-like protein from deinococcus radiodurans, complex with manganese
Deposited on 2011-04-01, released 2011-07-06
The last revision was dated 2017-07-05, with a file datestamp of 2017-06-30.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: mazg-like nucleoside triphosphate pyrophosphohydrolase
    Species: DEINOCOCCUS RADIODURANS [TaxId:243230]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RS96 (6-End)
      • expression tag (0-5)
  • Chain 'B':
    Compound: mazg-like nucleoside triphosphate pyrophosphohydrolase
    Species: DEINOCOCCUS RADIODURANS [TaxId:243230]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RS96 (6-End)
      • expression tag (1-5)
  • Chain 'C':
    Compound: mazg-like nucleoside triphosphate pyrophosphohydrolase
    Species: DEINOCOCCUS RADIODURANS [TaxId:243230]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RS96 (6-153)
      • expression tag (1-5)
  • Chain 'D':
    Compound: mazg-like nucleoside triphosphate pyrophosphohydrolase
    Species: DEINOCOCCUS RADIODURANS [TaxId:243230]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RS96 (6-End)
      • expression tag (0-5)
  • Chain 'E':
    Compound: mazg-like nucleoside triphosphate pyrophosphohydrolase
    Species: DEINOCOCCUS RADIODURANS [TaxId:243230]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RS96 (6-153)
      • expression tag (1-5)
  • Chain 'F':
    Compound: mazg-like nucleoside triphosphate pyrophosphohydrolase
    Species: DEINOCOCCUS RADIODURANS [TaxId:243230]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RS96 (6-End)
      • expression tag (2-5)
  • Heterogens: MN, SO4, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2yf3A (A:)
gidpftmsdlpcpptnaerlhefhraigaatperptppppellrlrqtlldeesaevrae
idhllarqaagealsagdlaplaheladllyvtygaldqlgidadavfaevhranlskas
gprradgkqlkpegwrpadvrgvierlqhapadd

    Sequence, based on observed residues (ATOM records):
    >2yf3A (A:)
gidpftmsdlpcpptnaerlhefhraigaatperptppppellrlrqtlldeesaevrae
idhllarqaagealsagdlaplaheladllyvtygaldqlgidadavfaevhranlskas
gprradgkqlkpegwrpadvrgvierlqha

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2yf3B (B:)
gidpftmsdlpcpptnaerlhefhraigaatperptppppellrlrqtlldeesaevrae
idhllarqaagealsagdlaplaheladllyvtygaldqlgidadavfaevhranlskas
gprradgkqlkpegwrpadvrgvierlqhapadd

    Sequence, based on observed residues (ATOM records):
    >2yf3B (B:)
idpftmpcpptnaerlhefhraigaatperptppppellrlrqtlldeesaevraeidhl
larqaagealsagdlaplaheladllyvtygaldqlgidadavfaevhranlskasgprr
adgkqlkpegwrpadvrgvierlqhapad

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2yf3C (C:)
gidpftmsdlpcpptnaerlhefhraigaatperptppppellrlrqtlldeesaevrae
idhllarqaagealsagdlaplaheladllyvtygaldqlgidadavfaevhranlskas
gprradgkqlkpegwrpadvrgvierlqhapadd

    Sequence, based on observed residues (ATOM records):
    >2yf3C (C:)
idpftmsdlpcpptnaerlhefhraigaatperptppppellrlrqtlldeesaevraei
dhllarqaagealsagdlaplaheladllyvtygaldqlgidadavfaevhranlskasg
prradgkqlkpegwrpadvrgvierlqhapadd

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2yf3D (D:)
gidpftmsdlpcpptnaerlhefhraigaatperptppppellrlrqtlldeesaevrae
idhllarqaagealsagdlaplaheladllyvtygaldqlgidadavfaevhranlskas
gprradgkqlkpegwrpadvrgvierlqhapadd

    Sequence, based on observed residues (ATOM records):
    >2yf3D (D:)
gidpftmsdlpcpptnaerlhefhraigaatperptppppellrlrqtlldeesaevrae
idhllarqaagealsagdlaplaheladllyvtygaldqlgidadavfaevhranlskas
gprradgkqlkpegwrpadvrgvierlqhapad

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2yf3E (E:)
gidpftmsdlpcpptnaerlhefhraigaatperptppppellrlrqtlldeesaevrae
idhllarqaagealsagdlaplaheladllyvtygaldqlgidadavfaevhranlskas
gprradgkqlkpegwrpadvrgvierlqhapadd

    Sequence, based on observed residues (ATOM records):
    >2yf3E (E:)
idpftmsdlpcpptnaerlhefhraigaatperptppppellrlrqtlldeesaevraei
dhllarqaagealsagdlaplaheladllyvtygaldqlgidadavfaevhranlskasg
prradgkqlkpegwrpadvrgvierlqhapadd

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2yf3F (F:)
gidpftmsdlpcpptnaerlhefhraigaatperptppppellrlrqtlldeesaevrae
idhllarqaagealsagdlaplaheladllyvtygaldqlgidadavfaevhranlskas
gprradgkqlkpegwrpadvrgvierlqhapadd

    Sequence, based on observed residues (ATOM records):
    >2yf3F (F:)
dpftmpcpptnaerlhefhraigaatperptppppellrlrqtlldeesaevraeidhll
arqaagealsagdlaplaheladllyvtygaldqlgidadavfaevhranlskasgprra
dgkqlkpegwrpadvrgvierlqhapad