PDB entry 2yf1

View 2yf1 on RCSB PDB site
Description: complex of a b21 chicken MHC class I molecule and a 11mer chicken peptide
Class: immune system
Keywords: immune system, bf21, immune response, immunoglobulin domain
Deposited on 2011-03-31, released 2012-04-11
Made obsolete by 5ad0 on 2016-09-28

The last revision prior to the SCOPe 2.06 freeze date was dated 2012-04-11, with a file datestamp of 2012-04-06.
Experiment type: XRAY
Resolution: 2.75 Å
R-factor: 0.2116
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Major histocompatibility complex class I glycoprotein haplotype B21
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2yf1a1, d2yf1a2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2yf1b_
  • Chain 'C':
    Compound: peptide
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed):
    • PDB 2YF1 (0-10)
  • Heterogens: CA, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2yf1A (A:)
    mgscgalglglllaavcgaaaelhtlryirtamtdpgpglpwfvdvgyvdgelfmhynst
    arravprtewiaantdqqywdretqivqgseqinrenldilrrrynqtggshtvqwmsgc
    diledgtirgyhqaaydgrdfvafdkgtmtltaavpeavptkrkweeggyaeglkqylee
    tcvewlrryveygkaelgrrerpevrvwgkeadgiltlscrahgfyprpivvswlkdgav
    rgqdaqsggivpngdgtyhtwvtidaqpgdgdkyqcrvehaslpqpglyswrsggglndi
    feaqkiewhensssvdklaaalehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >2yf1A (A:)
    elhtlryirtamtdpgpglpwfvdvgyvdgelfmhynstarravprtewiaantdqqywd
    retqivqgseqinrenldilrrrynqtggshtvqwmsgcdiledgtirgyhqaaydgrdf
    vafdkgtmtltaavpeavptkrkweeggyaeglkqyleetcvewlrryveygkaelgrre
    rpevrvwgkeadgiltlscrahgfyprpivvswlkdgavrgqdaqsggivpngdgtyhtw
    vtidaqpgdgdkyqcrvehaslpqpglysw
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2yf1B (B:)
    dltpkvqvysrfpasagtknvlncfaagfhppkisitlmkdgvpmegaqysdmsfnddwt
    fqrlvhadftpssgstyackvehetlkepqvykwdpef
    

  • Chain 'C':
    No sequence available.