PDB entry 2yew

View 2yew on RCSB PDB site
Description: modeling barmah forest virus structural proteins
Deposited on 2011-03-31, released 2012-04-18
The last revision was dated 2019-10-23, with a file datestamp of 2019-10-18.
Experiment type: EM
Resolution: 5 Å
R-factor: N/A
AEROSPACI score: -0.02 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: capsid protein
    Species: BARMAH FOREST VIRUS [TaxId:11020]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: e1 envelope glycoprotein
    Species: BARMAH FOREST VIRUS [TaxId:11020]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: e2 envelope glycoprotein
    Species: BARMAH FOREST VIRUS [TaxId:11020]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: capsid protein
    Species: BARMAH FOREST VIRUS [TaxId:11020]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: e1 envelope glycoprotein
    Species: BARMAH FOREST VIRUS [TaxId:11020]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: e2 envelope glycoprotein
    Species: BARMAH FOREST VIRUS [TaxId:11020]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: capsid protein
    Species: BARMAH FOREST VIRUS [TaxId:11020]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: e1 envelope glycoprotein
    Species: BARMAH FOREST VIRUS [TaxId:11020]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: e2 envelope glycoprotein
    Species: BARMAH FOREST VIRUS [TaxId:11020]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: capsid protein
    Species: BARMAH FOREST VIRUS [TaxId:11020]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: e1 envelope glycoprotein
    Species: BARMAH FOREST VIRUS [TaxId:11020]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: e2 envelope glycoprotein
    Species: BARMAH FOREST VIRUS [TaxId:11020]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2yewA (A:)
mdfiptqtfygrrwrpapvqryipqpqppapprrrrgpsqlqqlvaalgalalqpkqkqk
raqkkpkktpppkpkktqkpkkptqkkkskpgkrmrncmkiendcifpvmldgkvngyac
lvgdkvmkpahvkgtidnpelakltfkksskydlecaqvpvcmksdaskfthekpeghyn
whhgavqfsngrftiptgsgkpgdsgrpifdntgkvvaivlgganegartalsvvtwnkd
mvtritpeesvew

    Sequence, based on observed residues (ATOM records):
    >2yewA (A:)
ptqkkkskpgkrmrncmkiendcifpvmldgkvngyaclvgdkvmkpahvkgtidnpela
kltfkksskydlecaqvpvcmksdaskfthekpeghynwhhgavqfsngrftiptgsgkp
gdsgrpifdntgkvvaivlgganegartalsvvtwnkdmvtritpeesvew

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2yewB (B:)
yesttmpnqvgipfkalierpgyaglplslvvikselvpslvqdyitcnyktvvpspyik
ccggaecskneadykcsvftgvypfmwggaycfcdtensqmsevyvtrgesceadaiayq
vtaslkaqvmisigelnqtvdvfvngdspariqqskfilgpissawspfdkvivyrdevy
nedyapygsgqagrfgdiqsrtvnstdvyantnlklkrpasgnvhvpytqtpsgfsywkk
ekgvplnrnapfgciikvnpvraencvygnipismdiadaftridespsvslkacevqsc
tyssdfggvasisytsnkvgkcaissnsatmkdsvqdvqesgalslffatssvepnfvvq
vcnaritcgkceppkdivpyaakndaefpsisttawqwlattsgpltilvvaiivvvvvs
ivvcarh

    Sequence, based on observed residues (ATOM records):
    >2yewB (B:)
yesttmpnqvgipfkalierpgyaglplslvvikselvpslvqdyitcnyktvvpspyik
ccggaecskneadykcsvftgvypfmwggaycfcdtensqmsevyvtrgesceadaiayq
vtaslkaqvmisigelnqtvdvfvngdspariqqskfilgpissawspfdkvivyrdevy
nedyapygsgqagrfgdiqsrtvnstdvyantnlklkrpasgnvvpytqtpsgfsywkke
kgvplnrnapfgciikvnpvraencvygnipismdiadaftridespsvslkacevqsct
yssdfggvasisytsnkvgkcaissnsatmkdsvqdvqesgalslffatssvepnfvvqv
cnaritcgkceppkdivpyaakndaefpsisttawqwlattsgpltilvvaiivvvvvsi
vvcarh

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >2yewC (C:)
svahfeaykatrpyigwcadcglagscpspvsiehvwsdaddgvlkiqvsmqigiaksnt
inhakirymgangvqeaerstlsvsttapcdilatmghfilarcrpgsqvevslstdpkl
lcrtpfshkprfignekspaptghktripcktyshqtdltreeitmhvppdvpiqglvsn
tgksysldpktktikykctcgetvkegtatnkitlfncdtapkcityavdntvwqynsqy
vprsevtevkgkihvpfpltdstcavsvapepqvtyrlgevefhfhpmyptlfsirslgk
dpshsqewidtpmsktiqvgaegveyvwgnnnpvrlwaqksssssahgnpisivshyydl
ypywtitvlaslgllivissgfscflcsvartkcltpyqlapgaqlptfiallccaksar
a

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2yewD (D:)
mdfiptqtfygrrwrpapvqryipqpqppapprrrrgpsqlqqlvaalgalalqpkqkqk
raqkkpkktpppkpkktqkpkkptqkkkskpgkrmrncmkiendcifpvmldgkvngyac
lvgdkvmkpahvkgtidnpelakltfkksskydlecaqvpvcmksdaskfthekpeghyn
whhgavqfsngrftiptgsgkpgdsgrpifdntgkvvaivlgganegartalsvvtwnkd
mvtritpeesvew

    Sequence, based on observed residues (ATOM records):
    >2yewD (D:)
ptqkkkskpgkrmrncmkiendcifpvmldgkvngyaclvgdkvmkpahvkgtidnpela
kltfkksskydlecaqvpvcmksdaskfthekpeghynwhhgavqfsngrftiptgsgkp
gdsgrpifdntgkvvaivlgganegartalsvvtwnkdmvtritpeesvew

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2yewE (E:)
yesttmpnqvgipfkalierpgyaglplslvvikselvpslvqdyitcnyktvvpspyik
ccggaecskneadykcsvftgvypfmwggaycfcdtensqmsevyvtrgesceadaiayq
vtaslkaqvmisigelnqtvdvfvngdspariqqskfilgpissawspfdkvivyrdevy
nedyapygsgqagrfgdiqsrtvnstdvyantnlklkrpasgnvhvpytqtpsgfsywkk
ekgvplnrnapfgciikvnpvraencvygnipismdiadaftridespsvslkacevqsc
tyssdfggvasisytsnkvgkcaissnsatmkdsvqdvqesgalslffatssvepnfvvq
vcnaritcgkceppkdivpyaakndaefpsisttawqwlattsgpltilvvaiivvvvvs
ivvcarh

    Sequence, based on observed residues (ATOM records):
    >2yewE (E:)
yesttmpnqvgipfkalierpgyaglplslvvikselvpslvqdyitcnyktvvpspyik
ccggaecskneadykcsvftgvypfmwggaycfcdtensqmsevyvtrgesceadaiayq
vtaslkaqvmisigelnqtvdvfvngdspariqqskfilgpissawspfdkvivyrdevy
nedyapygsgqagrfgdiqsrtvnstdvyantnlklkrpasgnvvpytqtpsgfsywkke
kgvplnrnapfgciikvnpvraencvygnipismdiadaftridespsvslkacevqsct
yssdfggvasisytsnkvgkcaissnsatmkdsvqdvqesgalslffatssvepnfvvqv
cnaritcgkceppkdivpyaakndaefpsisttawqwlattsgpltilvvaiivvvvvsi
vvcarh

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >2yewF (F:)
svahfeaykatrpyigwcadcglagscpspvsiehvwsdaddgvlkiqvsmqigiaksnt
inhakirymgangvqeaerstlsvsttapcdilatmghfilarcrpgsqvevslstdpkl
lcrtpfshkprfignekspaptghktripcktyshqtdltreeitmhvppdvpiqglvsn
tgksysldpktktikykctcgetvkegtatnkitlfncdtapkcityavdntvwqynsqy
vprsevtevkgkihvpfpltdstcavsvapepqvtyrlgevefhfhpmyptlfsirslgk
dpshsqewidtpmsktiqvgaegveyvwgnnnpvrlwaqksssssahgnpisivshyydl
ypywtitvlaslgllivissgfscflcsvartkcltpyqlapgaqlptfiallccaksar
a

  • Chain 'G':
    Sequence, based on SEQRES records:
    >2yewG (G:)
mdfiptqtfygrrwrpapvqryipqpqppapprrrrgpsqlqqlvaalgalalqpkqkqk
raqkkpkktpppkpkktqkpkkptqkkkskpgkrmrncmkiendcifpvmldgkvngyac
lvgdkvmkpahvkgtidnpelakltfkksskydlecaqvpvcmksdaskfthekpeghyn
whhgavqfsngrftiptgsgkpgdsgrpifdntgkvvaivlgganegartalsvvtwnkd
mvtritpeesvew

    Sequence, based on observed residues (ATOM records):
    >2yewG (G:)
ptqkkkskpgkrmrncmkiendcifpvmldgkvngyaclvgdkvmkpahvkgtidnpela
kltfkksskydlecaqvpvcmksdaskfthekpeghynwhhgavqfsngrftiptgsgkp
gdsgrpifdntgkvvaivlgganegartalsvvtwnkdmvtritpeesvew

  • Chain 'H':
    Sequence, based on SEQRES records:
    >2yewH (H:)
yesttmpnqvgipfkalierpgyaglplslvvikselvpslvqdyitcnyktvvpspyik
ccggaecskneadykcsvftgvypfmwggaycfcdtensqmsevyvtrgesceadaiayq
vtaslkaqvmisigelnqtvdvfvngdspariqqskfilgpissawspfdkvivyrdevy
nedyapygsgqagrfgdiqsrtvnstdvyantnlklkrpasgnvhvpytqtpsgfsywkk
ekgvplnrnapfgciikvnpvraencvygnipismdiadaftridespsvslkacevqsc
tyssdfggvasisytsnkvgkcaissnsatmkdsvqdvqesgalslffatssvepnfvvq
vcnaritcgkceppkdivpyaakndaefpsisttawqwlattsgpltilvvaiivvvvvs
ivvcarh

    Sequence, based on observed residues (ATOM records):
    >2yewH (H:)
yesttmpnqvgipfkalierpgyaglplslvvikselvpslvqdyitcnyktvvpspyik
ccggaecskneadykcsvftgvypfmwggaycfcdtensqmsevyvtrgesceadaiayq
vtaslkaqvmisigelnqtvdvfvngdspariqqskfilgpissawspfdkvivyrdevy
nedyapygsgqagrfgdiqsrtvnstdvyantnlklkrpasgnvvpytqtpsgfsywkke
kgvplnrnapfgciikvnpvraencvygnipismdiadaftridespsvslkacevqsct
yssdfggvasisytsnkvgkcaissnsatmkdsvqdvqesgalslffatssvepnfvvqv
cnaritcgkceppkdivpyaakndaefpsisttawqwlattsgpltilvvaiivvvvvsi
vvcarh

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >2yewI (I:)
svahfeaykatrpyigwcadcglagscpspvsiehvwsdaddgvlkiqvsmqigiaksnt
inhakirymgangvqeaerstlsvsttapcdilatmghfilarcrpgsqvevslstdpkl
lcrtpfshkprfignekspaptghktripcktyshqtdltreeitmhvppdvpiqglvsn
tgksysldpktktikykctcgetvkegtatnkitlfncdtapkcityavdntvwqynsqy
vprsevtevkgkihvpfpltdstcavsvapepqvtyrlgevefhfhpmyptlfsirslgk
dpshsqewidtpmsktiqvgaegveyvwgnnnpvrlwaqksssssahgnpisivshyydl
ypywtitvlaslgllivissgfscflcsvartkcltpyqlapgaqlptfiallccaksar
a

  • Chain 'J':
    Sequence, based on SEQRES records:
    >2yewJ (J:)
mdfiptqtfygrrwrpapvqryipqpqppapprrrrgpsqlqqlvaalgalalqpkqkqk
raqkkpkktpppkpkktqkpkkptqkkkskpgkrmrncmkiendcifpvmldgkvngyac
lvgdkvmkpahvkgtidnpelakltfkksskydlecaqvpvcmksdaskfthekpeghyn
whhgavqfsngrftiptgsgkpgdsgrpifdntgkvvaivlgganegartalsvvtwnkd
mvtritpeesvew

    Sequence, based on observed residues (ATOM records):
    >2yewJ (J:)
ptqkkkskpgkrmrncmkiendcifpvmldgkvngyaclvgdkvmkpahvkgtidnpela
kltfkksskydlecaqvpvcmksdaskfthekpeghynwhhgavqfsngrftiptgsgkp
gdsgrpifdntgkvvaivlgganegartalsvvtwnkdmvtritpeesvew

  • Chain 'K':
    Sequence, based on SEQRES records:
    >2yewK (K:)
yesttmpnqvgipfkalierpgyaglplslvvikselvpslvqdyitcnyktvvpspyik
ccggaecskneadykcsvftgvypfmwggaycfcdtensqmsevyvtrgesceadaiayq
vtaslkaqvmisigelnqtvdvfvngdspariqqskfilgpissawspfdkvivyrdevy
nedyapygsgqagrfgdiqsrtvnstdvyantnlklkrpasgnvhvpytqtpsgfsywkk
ekgvplnrnapfgciikvnpvraencvygnipismdiadaftridespsvslkacevqsc
tyssdfggvasisytsnkvgkcaissnsatmkdsvqdvqesgalslffatssvepnfvvq
vcnaritcgkceppkdivpyaakndaefpsisttawqwlattsgpltilvvaiivvvvvs
ivvcarh

    Sequence, based on observed residues (ATOM records):
    >2yewK (K:)
yesttmpnqvgipfkalierpgyaglplslvvikselvpslvqdyitcnyktvvpspyik
ccggaecskneadykcsvftgvypfmwggaycfcdtensqmsevyvtrgesceadaiayq
vtaslkaqvmisigelnqtvdvfvngdspariqqskfilgpissawspfdkvivyrdevy
nedyapygsgqagrfgdiqsrtvnstdvyantnlklkrpasgnvvpytqtpsgfsywkke
kgvplnrnapfgciikvnpvraencvygnipismdiadaftridespsvslkacevqsct
yssdfggvasisytsnkvgkcaissnsatmkdsvqdvqesgalslffatssvepnfvvqv
cnaritcgkceppkdivpyaakndaefpsisttawqwlattsgpltilvvaiivvvvvsi
vvcarh

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >2yewL (L:)
svahfeaykatrpyigwcadcglagscpspvsiehvwsdaddgvlkiqvsmqigiaksnt
inhakirymgangvqeaerstlsvsttapcdilatmghfilarcrpgsqvevslstdpkl
lcrtpfshkprfignekspaptghktripcktyshqtdltreeitmhvppdvpiqglvsn
tgksysldpktktikykctcgetvkegtatnkitlfncdtapkcityavdntvwqynsqy
vprsevtevkgkihvpfpltdstcavsvapepqvtyrlgevefhfhpmyptlfsirslgk
dpshsqewidtpmsktiqvgaegveyvwgnnnpvrlwaqksssssahgnpisivshyydl
ypywtitvlaslgllivissgfscflcsvartkcltpyqlapgaqlptfiallccaksar
a