PDB entry 2ydx

View 2ydx on RCSB PDB site
Description: Crystal structure of human S-adenosylmethionine synthetase 2, beta subunit
Class: oxidoreductase
Keywords: oxidoreductase, transferase
Deposited on 2011-03-25, released 2011-04-27
The last revision prior to the SCOPe 2.06 freeze date was dated 2013-07-24, with a file datestamp of 2013-07-19.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.1686
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: methionine adenosyltransferase 2 subunit beta
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9NZL9 (1-307)
      • expression tag (0)
      • expression tag (308-311)
    Domains in SCOPe 2.06: d2ydxa1, d2ydxa2, d2ydxa3
  • Chain 'B':
    Compound: methionine adenosyltransferase 2 subunit beta
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9NZL9 (1-307)
      • expression tag (0)
      • expression tag (308-311)
    Domains in SCOPe 2.06: d2ydxb1, d2ydxb2, d2ydxb3
  • Chain 'C':
    Compound: methionine adenosyltransferase 2 subunit beta
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9NZL9 (1-307)
      • expression tag (0)
      • expression tag (308-311)
    Domains in SCOPe 2.06: d2ydxc1, d2ydxc2, d2ydxc3
  • Chain 'D':
    Compound: methionine adenosyltransferase 2 subunit beta
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9NZL9 (1-307)
      • expression tag (0)
      • expression tag (308-311)
    Domains in SCOPe 2.06: d2ydxd1, d2ydxd2, d2ydxd3
  • Chain 'E':
    Compound: methionine adenosyltransferase 2 subunit beta
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9NZL9 (1-307)
      • expression tag (0)
      • expression tag (308-311)
    Domains in SCOPe 2.06: d2ydxe1, d2ydxe2, d2ydxe3
  • Heterogens: STL, NAP, SO4, CA, TXP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2ydxA (A:)
mnrrvlvtgatgllgravhkefqqnnwhavgcgfrrarpkfeqvnlldsnavhhiihdfq
phvivhcaaerrpdvvenqpdaasqlnvdasgnlakeaaavgafliyissdyvfdgtnpp
yreedipaplnlygktkldgekavlennlgaavlripilygevekleesavtvmfdkvqf
snksanmdhwqqrfpthvkdvatvcrqlaekrmldpsikgtfhwsgneqmtkyemacaia
dafnlpsshlrpitdspvlgaqrprnaqldcskletlgigqrtpfrigikeslwpflidk
rwrqtvfhaenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >2ydxA (A:)
mnrrvlvtgatgllgravhkefqqnnwhavgcgfrrarpkfeqvnlldsnavhhiihdfq
phvivhcaaerrpdvvenqpdaasqlnvdasgnlakeaaavgafliyissdyvfdgtnpp
yreedipaplnlygktkldgekavlennlgaavlripilygevekleesavtvmfdkvqf
snksanmdhwqqrfpthvkdvatvcrqlaekrmldpsikgtfhwsgneqmtkyemacaia
dafnlpsshlrpitdspvlgaqrprnaqldcskletlgigqrtpfrigikeslwpflidk
rwrqtvfhaenl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2ydxB (B:)
mnrrvlvtgatgllgravhkefqqnnwhavgcgfrrarpkfeqvnlldsnavhhiihdfq
phvivhcaaerrpdvvenqpdaasqlnvdasgnlakeaaavgafliyissdyvfdgtnpp
yreedipaplnlygktkldgekavlennlgaavlripilygevekleesavtvmfdkvqf
snksanmdhwqqrfpthvkdvatvcrqlaekrmldpsikgtfhwsgneqmtkyemacaia
dafnlpsshlrpitdspvlgaqrprnaqldcskletlgigqrtpfrigikeslwpflidk
rwrqtvfhaenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >2ydxB (B:)
mnrrvlvtgatgllgravhkefqqnnwhavgcgfrrarpkfeqvnlldsnavhhiihdfq
phvivhcaaerrpdvvenqpdaasqlnvdasgnlakeaaavgafliyissdyvfdgtnpp
yreedipaplnlygktkldgekavlennlgaavlripilygevekleesavtvmfdkvqf
snksanmdhwqqrfpthvkdvatvcrqlaekrmldpsikgtfhwsgneqmtkyemacaia
dafnlpsshlrpitdspvlgaqrprnaqldcskletlgigqrtpfrigikeslwpflidk
rwrqtvfhaenl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2ydxC (C:)
mnrrvlvtgatgllgravhkefqqnnwhavgcgfrrarpkfeqvnlldsnavhhiihdfq
phvivhcaaerrpdvvenqpdaasqlnvdasgnlakeaaavgafliyissdyvfdgtnpp
yreedipaplnlygktkldgekavlennlgaavlripilygevekleesavtvmfdkvqf
snksanmdhwqqrfpthvkdvatvcrqlaekrmldpsikgtfhwsgneqmtkyemacaia
dafnlpsshlrpitdspvlgaqrprnaqldcskletlgigqrtpfrigikeslwpflidk
rwrqtvfhaenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >2ydxC (C:)
mnrrvlvtgatgllgravhkefqqnnwhavgcgfrrarpkfeqvnlldsnavhhiihdfq
phvivhcaaerrpdvvenqpdaasqlnvdasgnlakeaaavgafliyissdyvfdgtnpp
yreedipaplnlygktkldgekavlennlgaavlripilygevekleesavtvmfdkvqf
snksanmdhwqqrfpthvkdvatvcrqlaekrmldpsikgtfhwsgneqmtkyemacaia
dafnlpsshlrpitdspvlgaqrprnaqldcskletlgigqrtpfrigikeslwpflidk
rwrqtvfhaenl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2ydxD (D:)
mnrrvlvtgatgllgravhkefqqnnwhavgcgfrrarpkfeqvnlldsnavhhiihdfq
phvivhcaaerrpdvvenqpdaasqlnvdasgnlakeaaavgafliyissdyvfdgtnpp
yreedipaplnlygktkldgekavlennlgaavlripilygevekleesavtvmfdkvqf
snksanmdhwqqrfpthvkdvatvcrqlaekrmldpsikgtfhwsgneqmtkyemacaia
dafnlpsshlrpitdspvlgaqrprnaqldcskletlgigqrtpfrigikeslwpflidk
rwrqtvfhaenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >2ydxD (D:)
mnrrvlvtgatgllgravhkefqqnnwhavgcgfrrarpkfeqvnlldsnavhhiihdfq
phvivhcaaerrpdvvenqpdaasqlnvdasgnlakeaaavgafliyissdyvfdgtnpp
yreedipaplnlygktkldgekavlennlgaavlripilygevekleesavtvmfdkvqf
snksanmdhwqqrfpthvkdvatvcrqlaekrmldpsikgtfhwsgneqmtkyemacaia
dafnlpsshlrpitdspvlgaqrprnaqldcskletlgigqrtpfrigikeslwpflidk
rwrqtvfhaenl

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2ydxE (E:)
mnrrvlvtgatgllgravhkefqqnnwhavgcgfrrarpkfeqvnlldsnavhhiihdfq
phvivhcaaerrpdvvenqpdaasqlnvdasgnlakeaaavgafliyissdyvfdgtnpp
yreedipaplnlygktkldgekavlennlgaavlripilygevekleesavtvmfdkvqf
snksanmdhwqqrfpthvkdvatvcrqlaekrmldpsikgtfhwsgneqmtkyemacaia
dafnlpsshlrpitdspvlgaqrprnaqldcskletlgigqrtpfrigikeslwpflidk
rwrqtvfhaenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >2ydxE (E:)
mnrrvlvtgatgllgravhkefqqnnwhavgcgfrrarpkfeqvnlldsnavhhiihdfq
phvivhcaaerrpdvvenqpdaasqlnvdasgnlakeaaavgafliyissdyvfdgtnpp
yreedipaplnlygktkldgekavlennlgaavlripilygevekleesavtvmfdkvqf
snksanmdhwqqrfpthvkdvatvcrqlaekrmldpsikgtfhwsgneqmtkyemacaia
dafnlpsshlrpitdspvlgaqrprnaqldcskletlgigqrtpfrigikeslwpflidk
rwrqtvfhaenl