PDB entry 2ydu

View 2ydu on RCSB PDB site
Description: crystal structure of yoph in complex with 3-(1,1-dioxido-3-oxoisothiazolidin-5-yl)benzaldeyde
Class: hydrolase
Keywords: hydrolase, antiplague drug design
Deposited on 2011-03-24, released 2011-11-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-11-02, with a file datestamp of 2011-10-28.
Experiment type: XRAY
Resolution: 1.79 Å
R-factor: 0.17778
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: outer protein h phosphatase
    Species: Yersinia pestis [TaxId:632]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7ARH8 (Start-305)
      • conflict (72)
      • conflict (229)
    Domains in SCOPe 2.08: d2ydua_
  • Heterogens: 79W, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2yduA (A:)
mrerphtsghhgagearatapstvspygpearaelssrlttlrntlapatndprylqacg
geklnrfrdiqcrrqtavradlnanyiqvgntrtiacqyplqsqleshfrmlaenrtpvl
avlassseianqrfgmpdyfrqsgtygsitveskmtqqvglgdgimadmytltireagqk
tisvpvvhvgnwpdqtavssevtkalaslvdqtaetkrnmyeskgssavaddsklrpvih
cragvgrtaqligamcmndsrnsqlsvedmvsqmrvqrngimvqkdeqldvliklaegqg
rpllns

    Sequence, based on observed residues (ATOM records): (download) 
    >2yduA (A:)
spygpearaelssrlttlrntlapatndprylqacggeklnrfrdiqcrrqtavradlna
nyiqvgntrtiacqyplqsqleshfrmlaenrtpvlavlassseianqrfgmpdyfrqsg
tygsitveskmtqqvglgdgimadmytltireagqktisvpvvhvgnwpdqtavssevtk
alaslvdqtaetkrnmyeskgssavaddsklrpvihcragvgrtaqligamcmndsrnsq
lsvedmvsqmrvqrngimvqkdeqldvliklaegqgrpllns