PDB entry 2yds

View 2yds on RCSB PDB site
Description: cpoga d298n in complex with tab1-derived o-glcnac peptide
Deposited on 2011-03-24, released 2012-03-14
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: O-GlcNAcase nagJ
    Species: Clostridium perfringens [TaxId:1502]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0TR53
      • engineered mutation (269)
      • conflict (359)
  • Chain 'T':
    Compound: tgf-beta-activated kinase 1 and map3k7-binding protein 1
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAG, CD, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2ydsA (A:)
gsvgpktgeenqvlvpnlnptpenlevvgdgfkitssinlvgeeeadenavnalreflta
nnieinsendpnsttliigevdddipeldealngttaenlkeegyalvsndgkiaiegkd
gdgtfygvqtfkqlvkesnipevnitdyptvsargivegfygtpwthqdrldqikfygen
klntyiyapkddpyhrekwrepypesemqrmqelinasaenkvdfvfgispgidirfdgd
ageedfnhlitkaeslydmgvrsfaiywdniqdksaakhaqvlnrfneefvkakgdvkpl
itvpteydtgamvsngqpraytrifaetvdpsievmwtgpgvvtneiplsdaqlisgiyd
rnmavwwnypvtdyfkgklalgpmhgldkglnqyvdfftvnpmehaelskisihtaadys
wnmdnydydkawnraidmlygdlaedmkvfanhstrmdnktwaksgredapelrakmdel
wnklsskedasalieelygefarmeeacnnlkanlpevaleecsrqldelitlaqgdkas
ldmivaqlnedteayesakeiaqnklntalssfavisekvaqsfiqeals

    Sequence, based on observed residues (ATOM records):
    >2ydsA (A:)
nqvlvpnlnptpenlevvgdgfkitssinlvgeeeadenavnalrefltannieinsend
pnsttliigevdddipeldealngttaenlkeegyalvsndgkiaiegkdgdgtfygvqt
fkqlvkesnipevnitdyptvsargivegfygtpwthqdrldqikfygenklntyiyapk
ddpyhrekwrepypesemqrmqelinasaenkvdfvfgispgidirfdgdageedfnhli
tkaeslydmgvrsfaiywdniqdksaakhaqvlnrfneefvkakgdvkplitvpteydtg
amvsngqpraytrifaetvdpsievmwtgpgvvtneiplsdaqlisgiydrnmavwwnyp
vtdyfkgklalgpmhgldkglnqyvdfftvnpmehaelskisihtaadyswnmdnydydk
awnraidmlygdlaedmkvfanhstrmdnktwaksgredapelrakmdelwnklsskeda
salieelygefarmeeacnnlkanlpevaleecsrqldelitlaqgdkasldmivaqlne
dteayesakeiaqnklntalssfavisekvaqsfiqeal

  • Chain 'T':
    Sequence, based on SEQRES records:
    >2ydsT (T:)
vpyssaq

    Sequence, based on observed residues (ATOM records):
    >2ydsT (T:)
vpyss