PDB entry 2ydq

View 2ydq on RCSB PDB site
Description: cpoga d298n in complex with hoga-derived o-glcnac peptide
Deposited on 2011-03-24, released 2012-03-14
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: O-GlcNAcase nagJ
    Species: Clostridium perfringens [TaxId:1502]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0TR53 (Start-589)
      • engineered mutation (269)
      • engineered mutation (359)
  • Chain 'T':
    Compound: bifunctional protein ncoat
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: CD, NAG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2ydqA (A:)
    gsvgpktgeenqvlvpnlnptpenlevvgdgfkitssinlvgeeeadenavnalreflta
    nnieinsendpnsttliigevdddipeldealngttaenlkeegyalvsndgkiaiegkd
    gdgtfygvqtfkqlvkesnipevnitdyptvsargivegfygtpwthqdrldqikfygen
    klntyiyapkddpyhrekwrepypesemqrmqelinasaenkvdfvfgispgidirfdgd
    ageedfnhlitkaeslydmgvrsfaiywdniqdksaakhaqvlnrfneefvkakgdvkpl
    itvpteydtgamvsngqpraytrifaetvdpsievmwtgpgvvtneiplsdaqlisgiyd
    rnmavwwnypvtdyfkgklalgpmhgldkglnqyvdfftvnpmehaelskisihtaadys
    wnmdnydydkawnraidmlygdlaedmkvfanhstrmdnktwaksgredapelrakmdel
    wnklsskedasalieelygefarmeeacnnlkanlpevaleecsrqldelitlaqgdkas
    ldmivaqlnedteayesakeiaqnklntalssfavisekvaqsfiqeals
    

    Sequence, based on observed residues (ATOM records):
    >2ydqA (A:)
    qvlvpnlnptpenlevvgdgfkitssinlvgeeeadenavnalrefltannieinsendp
    nsttliigevdddipeldealngttaenlkeegyalvsndgkiaiegkdgdgtfygvqtf
    kqlvkesnipevnitdyptvsargivegfygtpwthqdrldqikfygenklntyiyapkd
    dpyhrekwrepypesemqrmqelinasaenkvdfvfgispgidirfdgdageedfnhlit
    kaeslydmgvrsfaiywdniqdksaakhaqvlnrfneefvkakgdvkplitvpteydtga
    mvsngqpraytrifaetvdpsievmwtgpgvvtneiplsdaqlisgiydrnmavwwnypv
    tdyfkgklalgpmhgldkglnqyvdfftvnpmehaelskisihtaadyswnmdnydydka
    wnraidmlygdlaedmkvfanhstrmdnktwaksgredapelrakmdelwnklsskedas
    alieelygefarmeeacnnlkanlpevaleecsrqldelitlaqgdkasldmivaqlned
    teayesakeiaqnklntalssfavisekvaqsfiqeals
    

  • Chain 'T':
    Sequence; same for both SEQRES and ATOM records:
    >2ydqT (T:)
    vahsgak