SCOPe 2.05: Structural Classification of Proteins

PDB entry 2ybv

View 2ybv on RCSB PDB site
Description: structure of rubisco from thermosynechococcus elongatus
Class: lyase
Keywords: co2/o2 specificity, carbon dioxide fixation, photosynthesis, thermostability, photorespiration, monooxygenase, hydroxylation, oxidoreductase, lyase, rubisco, chloroplast, calvin cycle, thermophilic cyanobacteria
Deposited on 2011-03-10, released 2012-03-28
The last revision prior to the SCOPe 2.05 freeze date was dated 2012-03-28, with a file datestamp of 2012-03-23.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.19763
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: ribulose bisphosphate carboxylase large chain
Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8DIS5
Domains in SCOPe 2.05: d2ybva1, d2ybva2
Chain 'B':
Compound: ribulose bisphosphate carboxylase small subunit
Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8DIS7
Domains in SCOPe 2.05: d2ybvb_
Chain 'C':
Compound: ribulose bisphosphate carboxylase large chain
Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8DIS5
Domains in SCOPe 2.05: d2ybvc1, d2ybvc2
Chain 'D':
Compound: ribulose bisphosphate carboxylase small subunit
Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8DIS7
Domains in SCOPe 2.05: d2ybvd_
Chain 'E':
Compound: ribulose bisphosphate carboxylase large chain
Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8DIS5
Domains in SCOPe 2.05: d2ybve1, d2ybve2
Chain 'F':
Compound: ribulose bisphosphate carboxylase small subunit
Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8DIS7
Domains in SCOPe 2.05: d2ybvf_
Chain 'G':
Compound: ribulose bisphosphate carboxylase large chain
Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8DIS5
Domains in SCOPe 2.05: d2ybvg1, d2ybvg2
Chain 'H':
Compound: ribulose bisphosphate carboxylase small subunit
Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8DIS7
Domains in SCOPe 2.05: d2ybvh_
Chain 'I':
Compound: ribulose bisphosphate carboxylase large chain
Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8DIS5
Domains in SCOPe 2.05: d2ybvi1, d2ybvi2
Chain 'J':
Compound: ribulose bisphosphate carboxylase small subunit
Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8DIS7
Domains in SCOPe 2.05: d2ybvj_
Chain 'K':
Compound: ribulose bisphosphate carboxylase large chain
Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8DIS5
Domains in SCOPe 2.05: d2ybvk1, d2ybvk2
Chain 'L':
Compound: ribulose bisphosphate carboxylase small subunit
Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8DIS7
Domains in SCOPe 2.05: d2ybvl_
Chain 'M':
Compound: ribulose bisphosphate carboxylase large chain
Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8DIS5
Domains in SCOPe 2.05: d2ybvm1, d2ybvm2
Chain 'N':
Compound: ribulose bisphosphate carboxylase small subunit
Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8DIS7
Domains in SCOPe 2.05: d2ybvn_
Chain 'O':
Compound: ribulose bisphosphate carboxylase large chain
Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8DIS5
Domains in SCOPe 2.05: d2ybvo1, d2ybvo2
Chain 'P':
Compound: ribulose bisphosphate carboxylase small subunit
Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8DIS7
Domains in SCOPe 2.05: d2ybvp_
Heterogens: CL, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>2ybvA (A:)
maytqsksqkvgyqagvkdyrltyytpdytpkdtdilaafrvtpqpgvpfeeaaaavaae
sstgtwttvwtdlltdldrykgccydieplpgednqfiayiaypldlfeegsvtnmltsi
vgnvfgfkalkalrledlripvaylktfqgpphgiqverdklnkygrpllgctikpklgl
saknygravyeclrggldftkddeninsqpfqrwrdrflfvadaihkaqaetgeikghyl
nvtaptceemlkraefakelempiimhdfltagftanttlskwcrdngmllhihramhav
mdrqknhgihfrvlakclrmsggdhihtgtvvgklegdkavtlgfvdllrenyieqdrsr
giyftqdwasmpgvmavasggihvwhmpalvdifgddavlqfgggtlghpwgnapgatan
rvaleaciqarnegrdlmreggdiireaarwspelaaacelwkeikfefeaqdti