PDB entry 2ybu

View 2ybu on RCSB PDB site
Description: crystal structure of human acidic chitinase in complex with bisdionin f
Deposited on 2011-03-10, released 2011-06-08
The last revision was dated 2018-02-14, with a file datestamp of 2018-02-09.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Acidic mammalian chitinase
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9BZP6 (3-End)
      • variant (27)
      • variant (29)
      • variant (43)
  • Chain 'B':
    Compound: Acidic mammalian chitinase
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9BZP6 (3-End)
      • variant (27)
      • variant (29)
      • variant (43)
  • Chain 'C':
    Compound: Acidic mammalian chitinase
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9BZP6 (3-End)
      • variant (27)
      • variant (29)
      • variant (43)
  • Chain 'D':
    Compound: Acidic mammalian chitinase
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9BZP6 (3-End)
      • variant (27)
      • variant (29)
      • variant (43)
  • Chain 'E':
    Compound: Acidic mammalian chitinase
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9BZP6 (3-End)
      • variant (27)
      • variant (29)
      • variant (43)
  • Chain 'F':
    Compound: Acidic mammalian chitinase
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9BZP6 (3-End)
      • variant (27)
      • variant (29)
      • variant (43)
  • Heterogens: GOL, CX9, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2ybuA (A:)
    eaeayqltcyftnwaqyrpglgrfmpddinpclcthliyafagmqnneittiewndvtly
    qafnglknknsqlktllaiggwnfgtapftamvstpenrqtfitsvikflrqyefdgldf
    dweypgsrgsppqdkhlftvlvqemreafeqeakqinkprlmvtaavaagisniqsgyei
    pqlsqyldyihvmtydlhgswegytgensplykyptdtgsnaylnvdyvmnywkdngapa
    eklivgfptyghnfilsnpsntgigaptsgagpagpyakesgiwayyeictflkngatqg
    wdapqevpyayqgnvwvgydniksfdikaqwlkhnkfggamvwaidlddftgtfcnqgkf
    plistlkkalglqsasctapa
    

    Sequence, based on observed residues (ATOM records):
    >2ybuA (A:)
    ayqltcyftnwaqyrpglgrfmpddinpclcthliyafagmqnneittiewndvtlyqaf
    nglknknsqlktllaiggwnfgtapftamvstpenrqtfitsvikflrqyefdgldfdwe
    ypgsrgsppqdkhlftvlvqemreafeqeakqinkprlmvtaavaagisniqsgyeipql
    sqyldyihvmtydlhgswegytgensplykyptdtgsnaylnvdyvmnywkdngapaekl
    ivgfptyghnfilsnpsntgigaptsgagpagpyakesgiwayyeictflkngatqgwda
    pqevpyayqgnvwvgydniksfdikaqwlkhnkfggamvwaidlddftgtfcnqgkfpli
    stlkkalglqsascta
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2ybuB (B:)
    eaeayqltcyftnwaqyrpglgrfmpddinpclcthliyafagmqnneittiewndvtly
    qafnglknknsqlktllaiggwnfgtapftamvstpenrqtfitsvikflrqyefdgldf
    dweypgsrgsppqdkhlftvlvqemreafeqeakqinkprlmvtaavaagisniqsgyei
    pqlsqyldyihvmtydlhgswegytgensplykyptdtgsnaylnvdyvmnywkdngapa
    eklivgfptyghnfilsnpsntgigaptsgagpagpyakesgiwayyeictflkngatqg
    wdapqevpyayqgnvwvgydniksfdikaqwlkhnkfggamvwaidlddftgtfcnqgkf
    plistlkkalglqsasctapa
    

    Sequence, based on observed residues (ATOM records):
    >2ybuB (B:)
    ayqltcyftnwaqyrpglgrfmpddinpclcthliyafagmqnneittiewndvtlyqaf
    nglknknsqlktllaiggwnfgtapftamvstpenrqtfitsvikflrqyefdgldfdwe
    ypgsrgsppqdkhlftvlvqemreafeqeakqinkprlmvtaavaagisniqsgyeipql
    sqyldyihvmtydlhgswegytgensplykyptdtgsnaylnvdyvmnywkdngapaekl
    ivgfptyghnfilsnpsntgigaptsgagpagpyakesgiwayyeictflkngatqgwda
    pqevpyayqgnvwvgydniksfdikaqwlkhnkfggamvwaidlddftgtfcnqgkfpli
    stlkkalglqsascta
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2ybuC (C:)
    eaeayqltcyftnwaqyrpglgrfmpddinpclcthliyafagmqnneittiewndvtly
    qafnglknknsqlktllaiggwnfgtapftamvstpenrqtfitsvikflrqyefdgldf
    dweypgsrgsppqdkhlftvlvqemreafeqeakqinkprlmvtaavaagisniqsgyei
    pqlsqyldyihvmtydlhgswegytgensplykyptdtgsnaylnvdyvmnywkdngapa
    eklivgfptyghnfilsnpsntgigaptsgagpagpyakesgiwayyeictflkngatqg
    wdapqevpyayqgnvwvgydniksfdikaqwlkhnkfggamvwaidlddftgtfcnqgkf
    plistlkkalglqsasctapa
    

    Sequence, based on observed residues (ATOM records):
    >2ybuC (C:)
    ayqltcyftnwaqyrpglgrfmpddinpclcthliyafagmqnneittiewndvtlyqaf
    nglknknsqlktllaiggwnfgtapftamvstpenrqtfitsvikflrqyefdgldfdwe
    ypgsrgsppqdkhlftvlvqemreafeqeakqinkprlmvtaavaagisniqsgyeipql
    sqyldyihvmtydlhgswegytgensplykyptdtgsnaylnvdyvmnywkdngapaekl
    ivgfptyghnfilsnpsntgigaptsgagpagpyakesgiwayyeictflkngatqgwda
    pqevpyayqgnvwvgydniksfdikaqwlkhnkfggamvwaidlddftgtfcnqgkfpli
    stlkkalglqsascta
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2ybuD (D:)
    eaeayqltcyftnwaqyrpglgrfmpddinpclcthliyafagmqnneittiewndvtly
    qafnglknknsqlktllaiggwnfgtapftamvstpenrqtfitsvikflrqyefdgldf
    dweypgsrgsppqdkhlftvlvqemreafeqeakqinkprlmvtaavaagisniqsgyei
    pqlsqyldyihvmtydlhgswegytgensplykyptdtgsnaylnvdyvmnywkdngapa
    eklivgfptyghnfilsnpsntgigaptsgagpagpyakesgiwayyeictflkngatqg
    wdapqevpyayqgnvwvgydniksfdikaqwlkhnkfggamvwaidlddftgtfcnqgkf
    plistlkkalglqsasctapa
    

    Sequence, based on observed residues (ATOM records):
    >2ybuD (D:)
    ayqltcyftnwaqyrpglgrfmpddinpclcthliyafagmqnneittiewndvtlyqaf
    nglknknsqlktllaiggwnfgtapftamvstpenrqtfitsvikflrqyefdgldfdwe
    ypgsrgsppqdkhlftvlvqemreafeqeakqinkprlmvtaavaagisniqsgyeipql
    sqyldyihvmtydlhgswegytgensplykyptdtgsnaylnvdyvmnywkdngapaekl
    ivgfptyghnfilsnpsntgigaptsgagpagpyakesgiwayyeictflkngatqgwda
    pqevpyayqgnvwvgydniksfdikaqwlkhnkfggamvwaidlddftgtfcnqgkfpli
    stlkkalglqsascta
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2ybuE (E:)
    eaeayqltcyftnwaqyrpglgrfmpddinpclcthliyafagmqnneittiewndvtly
    qafnglknknsqlktllaiggwnfgtapftamvstpenrqtfitsvikflrqyefdgldf
    dweypgsrgsppqdkhlftvlvqemreafeqeakqinkprlmvtaavaagisniqsgyei
    pqlsqyldyihvmtydlhgswegytgensplykyptdtgsnaylnvdyvmnywkdngapa
    eklivgfptyghnfilsnpsntgigaptsgagpagpyakesgiwayyeictflkngatqg
    wdapqevpyayqgnvwvgydniksfdikaqwlkhnkfggamvwaidlddftgtfcnqgkf
    plistlkkalglqsasctapa
    

    Sequence, based on observed residues (ATOM records):
    >2ybuE (E:)
    ayqltcyftnwaqyrpglgrfmpddinpclcthliyafagmqnneittiewndvtlyqaf
    nglknknsqlktllaiggwnfgtapftamvstpenrqtfitsvikflrqyefdgldfdwe
    ypgsrgsppqdkhlftvlvqemreafeqeakqinkprlmvtaavaagisniqsgyeipql
    sqyldyihvmtydlhgswegytgensplykyptdtgsnaylnvdyvmnywkdngapaekl
    ivgfptyghnfilsnpsntgigaptsgagpagpyakesgiwayyeictflkngatqgwda
    pqevpyayqgnvwvgydniksfdikaqwlkhnkfggamvwaidlddftgtfcnqgkfpli
    stlkkalglqsascta
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2ybuF (F:)
    eaeayqltcyftnwaqyrpglgrfmpddinpclcthliyafagmqnneittiewndvtly
    qafnglknknsqlktllaiggwnfgtapftamvstpenrqtfitsvikflrqyefdgldf
    dweypgsrgsppqdkhlftvlvqemreafeqeakqinkprlmvtaavaagisniqsgyei
    pqlsqyldyihvmtydlhgswegytgensplykyptdtgsnaylnvdyvmnywkdngapa
    eklivgfptyghnfilsnpsntgigaptsgagpagpyakesgiwayyeictflkngatqg
    wdapqevpyayqgnvwvgydniksfdikaqwlkhnkfggamvwaidlddftgtfcnqgkf
    plistlkkalglqsasctapa
    

    Sequence, based on observed residues (ATOM records):
    >2ybuF (F:)
    ayqltcyftnwaqyrpglgrfmpddinpclcthliyafagmqnneittiewndvtlyqaf
    nglknknsqlktllaiggwnfgtapftamvstpenrqtfitsvikflrqyefdgldfdwe
    ypgsrgsppqdkhlftvlvqemreafeqeakqinkprlmvtaavaagisniqsgyeipql
    sqyldyihvmtydlhgswegytgensplykyptdtgsnaylnvdyvmnywkdngapaekl
    ivgfptyghnfilsnpsntgigaptsgagpagpyakesgiwayyeictflkngatqgwda
    pqevpyayqgnvwvgydniksfdikaqwlkhnkfggamvwaidlddftgtfcnqgkfpli
    stlkkalglqsascta