PDB entry 2ybe

View 2ybe on RCSB PDB site
Description: the structure of the fully closed conformation of human pgk in complex with l-ADP, 3pg and the tsa aluminium tetrafluoride at 2.0 a resolution
Class: transferase
Keywords: transferase, l-nucleoside analogues, glycolysis, nucleotide binding
Deposited on 2011-03-07, released 2011-04-27
The last revision prior to the SCOPe 2.01 freeze date was dated 2011-06-29, with a file datestamp of 2011-06-24.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.19582
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Phosphoglycerate kinase 1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d2ybea_
  • Heterogens: MG, CL, LA8, ALF, 3PG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2ybeA (A:)
    mslsnkltldkldvkgkrvvmrvdfnvpmknnqitnnqrikaavpsikfcldngaksvvl
    mshlgrpdgvpmpdkyslepvavelksllgkdvlflkdcvgpevekacanpaagsville
    nlrfhveeegkgkdasgnkvkaepakieafraslsklgdvyvndafgtahrahssmvgvn
    lpqkaggflmkkelnyfakalesperpflailggakvadkiqlinnmldkvnemiigggm
    aftflkvlnnmeigtslfdeegakivkdlmskaekngvkitlpvdfvtadkfdenaktgq
    atvasgipagwmgldcgpesskkyaeavtrakqivwngpvgvfeweafargtkalmdevv
    katsrgcitiigggdtatccakwntedkvshvstgggaslellegkvlpgvdalsni
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ybeA (A:)
    lsnkltldkldvkgkrvvmrvdfnvpmknnqitnnqrikaavpsikfcldngaksvvlms
    hlgrpdgvpmpdkyslepvavelksllgkdvlflkdcvgpevekacanpaagsvillenl
    rfhveeegkgkkvkaepakieafraslsklgdvyvndafgtahrahssmvgvnlpqkagg
    flmkkelnyfakalesperpflailggakvadkiqlinnmldkvnemiigggmaftflkv
    lnnmeigtslfdeegakivkdlmskaekngvkitlpvdfvtadkfdenaktgqatvasgi
    pagwmgldcgpesskkyaeavtrakqivwngpvgvfeweafargtkalmdevvkatsrgc
    itiigggdtatccakwntedkvshvstgggaslellegkvlpgvdalsni