PDB entry 2yb0

View 2yb0 on RCSB PDB site
Description: the crystal structure of leishmania major dutpase in complex deoxyuridine
Class: hydrolase
Keywords: hydrolase
Deposited on 2011-02-25, released 2011-03-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-05-11, with a file datestamp of 2011-05-06.
Experiment type: XRAY
Resolution: 2.28 Å
R-factor: 0.211
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: dutpase
    Species: LEISHMANIA MAJOR [TaxId:5664]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2yb0a_
  • Chain 'B':
    Compound: dutpase
    Species: LEISHMANIA MAJOR [TaxId:5664]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2yb0b_
  • Chain 'D':
    Compound: dutpase
    Species: LEISHMANIA MAJOR [TaxId:5664]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2yb0d_
  • Chain 'E':
    Compound: dutpase
    Species: LEISHMANIA MAJOR [TaxId:5664]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2yb0e_
  • Heterogens: DUR, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2yb0A (A:)
gpamkrarsanipgailhslaelqdglnamidpswravrsldnwalaitmestelldsyp
wkwwknlnatpdlanvrielvdifhfslsgamqmrstpddeipaaslkplkevmttflpa
kectsdpygfvffpltdtqnaiasfrniiqlanayrfdviieciiyaaedlgfnlvayyi
akhtlncirqlsgykdgsyvkvnngvednsllhncikdvsldevldadkyvqawnsiman
vyeafqikesdrkdaerwfalakenrlaika

    Sequence, based on observed residues (ATOM records): (download) 
    >2yb0A (A:)
anipgailhslaelqdglnamidpswravrsldnwalaitmestelldsypwkwwknlna
tpdlanvrielvdifhfslsgamqmrstpddeipaaslkplkevmttflpakectsdpyg
fvffpltdtqnaiasfrniiqlanayrfdviieciiyaaedlgfnlvayyiakhtlncir
qlsgykdgsyvkvnngvednsllhncikdvsldevldadkyvqawnsimanvyeafqike
sdrkdaerwfalakenrl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2yb0B (B:)
gpamkrarsanipgailhslaelqdglnamidpswravrsldnwalaitmestelldsyp
wkwwknlnatpdlanvrielvdifhfslsgamqmrstpddeipaaslkplkevmttflpa
kectsdpygfvffpltdtqnaiasfrniiqlanayrfdviieciiyaaedlgfnlvayyi
akhtlncirqlsgykdgsyvkvnngvednsllhncikdvsldevldadkyvqawnsiman
vyeafqikesdrkdaerwfalakenrlaika

    Sequence, based on observed residues (ATOM records): (download) 
    >2yb0B (B:)
krarsanipgailhslaelqdglnamidpswravrsldnwalaitmestelldsypwkww
knlnatpdlanvrielvdifhfslsgamqmrstpddeipaaslkplkevmttflpakect
sdpygfvffpltdtqnaiasfrniiqlanayrfdviieciiyaaedlgfnlvayyiakht
lncirqlsgykdgsyvkvnngvednsllhncikdvsldevldadkyvqawnsimanvyea
fqikesdrkdaerwfalakenrl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2yb0D (D:)
gpamkrarsanipgailhslaelqdglnamidpswravrsldnwalaitmestelldsyp
wkwwknlnatpdlanvrielvdifhfslsgamqmrstpddeipaaslkplkevmttflpa
kectsdpygfvffpltdtqnaiasfrniiqlanayrfdviieciiyaaedlgfnlvayyi
akhtlncirqlsgykdgsyvkvnngvednsllhncikdvsldevldadkyvqawnsiman
vyeafqikesdrkdaerwfalakenrlaika

    Sequence, based on observed residues (ATOM records): (download) 
    >2yb0D (D:)
nipgailhslaelqdglnamidpswravrsldnwalaitmestelldsypwkwwknlnat
pdlanvrielvdifhfslsgamqmrstpddeipaaslkplkevmttflpakectsdpygf
vffpltdtqnaiasfrniiqlanayrfdviieciiyaaedlgfnlvayyiakhtlncirq
lsgykdgsyvkvnngvednsllhncikdvsldevldadkyvqawnsimanvyeafqikes
drkdaerwfalaken

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2yb0E (E:)
gpamkrarsanipgailhslaelqdglnamidpswravrsldnwalaitmestelldsyp
wkwwknlnatpdlanvrielvdifhfslsgamqmrstpddeipaaslkplkevmttflpa
kectsdpygfvffpltdtqnaiasfrniiqlanayrfdviieciiyaaedlgfnlvayyi
akhtlncirqlsgykdgsyvkvnngvednsllhncikdvsldevldadkyvqawnsiman
vyeafqikesdrkdaerwfalakenrlaika

    Sequence, based on observed residues (ATOM records): (download) 
    >2yb0E (E:)
mkrarsanipgailhslaelqdglnamidpswravrsldnwalaitmestelldsypwkw
wknlnatpdlanvrielvdifhfslsgamqmrstpddeipaaslkplkevmttflpakec
tsdpygfvffpltdtqnaiasfrniiqlanayrfdviieciiyaaedlgfnlvayyiakh
tlncirqlsgykdgsyvkvnngvednsllhncikdvsldevldadkyvqawnsimanvye
afqikesdrkdaerwfalakenrl