PDB entry 2ya5

View 2ya5 on RCSB PDB site
Description: crystal structure of streptococcus pneumoniae nana (tigr4) in complex with sialic acid
Deposited on 2011-02-18, released 2011-04-27
The last revision was dated 2020-09-02, with a file datestamp of 2020-08-28.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: neuraminidase a
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:170187]
    Database cross-references and differences (RAF-indexed):
    • Uniprot B2DJD9 (Start-492)
      • see remark 999 (155)
      • see remark 999 (299)
  • Chain 'B':
    Compound: neuraminidase a
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:170187]
    Database cross-references and differences (RAF-indexed):
    • Uniprot B2DJD9
      • see remark 999 (155)
      • see remark 999 (299)
  • Heterogens: SIA, FMT, CL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2ya5A (A:)
ahhhhhhssglevlfqgppegaaltektdifesgrngnpnkdgiksyripallktdkgtl
iagaderrlhssdwgdigmvirrsedngktwgdrvtitnlrdnpkasdpsigspvnidmv
lvqdpetkrifsiydmfpegkgifgmssqkeeaykkidgktyqilyregekgaytireng
tvytpdgkatdyrvvvdpvkpaysdkgdlykgdqllgniyfttnktspfriakdsylwms
ysdddgktwsapqditpmvkadwmkflgvgpgtgivlrngphkgrilipvyttnnvshld
gsqssrviysddhgktwhageavndnrqvdgqkihsstmnnrraqntestvvqlnngdvk
lfmrgltgdlqvatskdggvtwekdikrypqvkdvyvqmsaihtmhegkeyiilsnaggp
krengmvhlarveengeltwlkhnpiqkgefaynslqelgngeygilyehtekgqnaytl
sfrkfnweflskn

    Sequence, based on observed residues (ATOM records):
    >2ya5A (A:)
altektdifesgrngnpnkdgiksyripallktdkgtliagaderrlhssdwgdigmvir
rsedngktwgdrvtitnlrdnpkasdpsigspvnidmvlvqdpetkrifsiydmfpegkg
ifgmssqkeeaykkidgktyqilyregekgaytirengtvytpdgkatdyrvvvdpvkpa
ysdkgdlykgdqllgniyfttnktspfriakdsylwmsysdddgktwsapqditpmvkad
wmkflgvgpgtgivlrngphkgrilipvyttnnvshldgsqssrviysddhgktwhagea
vndnrqvdgqkihsstmnnrraqntestvvqlnngdvklfmrgltgdlqvatskdggvtw
ekdikrypqvkdvyvqmsaihtmhegkeyiilsnaggpkrengmvhlarveengeltwlk
hnpiqkgefaynslqelgngeygilyehtekgqnaytlsfrkfnweflskn

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2ya5B (B:)
ahhhhhhssglevlfqgppegaaltektdifesgrngnpnkdgiksyripallktdkgtl
iagaderrlhssdwgdigmvirrsedngktwgdrvtitnlrdnpkasdpsigspvnidmv
lvqdpetkrifsiydmfpegkgifgmssqkeeaykkidgktyqilyregekgaytireng
tvytpdgkatdyrvvvdpvkpaysdkgdlykgdqllgniyfttnktspfriakdsylwms
ysdddgktwsapqditpmvkadwmkflgvgpgtgivlrngphkgrilipvyttnnvshld
gsqssrviysddhgktwhageavndnrqvdgqkihsstmnnrraqntestvvqlnngdvk
lfmrgltgdlqvatskdggvtwekdikrypqvkdvyvqmsaihtmhegkeyiilsnaggp
krengmvhlarveengeltwlkhnpiqkgefaynslqelgngeygilyehtekgqnaytl
sfrkfnweflskn

    Sequence, based on observed residues (ATOM records):
    >2ya5B (B:)
altektdifesgrngnpnkdgiksyripallktdkgtliagaderrlhssdwgdigmvir
rsedngktwgdrvtitnlrdnpkasdpsigspvnidmvlvqdpetkrifsiydmfpegkg
ifgmssqkeeaykkidgktyqilyregekgaytirengtvytpdgkatdyrvvvdpvkpa
ysdkgdlykgdqllgniyfttnktspfriakdsylwmsysdddgktwsapqditpmvkad
wmkflgvgpgtgivlrngphkgrilipvyttnnvshldgsqssrviysddhgktwhagea
vndnrqvdgqkihsstmnnrraqntestvvqlnngdvklfmrgltgdlqvatskdggvtw
ekdikrypqvkdvyvqmsaihtmhegkeyiilsnaggpkrengmvhlarveengeltwlk
hnpiqkgefaynslqelgngeygilyehtekgqnaytlsfrkfnweflsk