PDB entry 2y9x

View 2y9x on RCSB PDB site
Description: crystal structure of ppo3, a tyrosinase from agaricus bisporus, in deoxy-form that contains additional unknown lectin-like subunit, with inhibitor tropolone
Deposited on 2011-02-17, released 2011-07-06
The last revision was dated 2019-10-30, with a file datestamp of 2019-10-25.
Experiment type: XRAY
Resolution: 2.78 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: polyphenol oxidase
    Species: AGARICUS BISPORUS [TaxId:5341]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: polyphenol oxidase
    Species: AGARICUS BISPORUS [TaxId:5341]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: polyphenol oxidase
    Species: AGARICUS BISPORUS [TaxId:5341]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: polyphenol oxidase
    Species: AGARICUS BISPORUS [TaxId:5341]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: lectin-like fold protein
    Species: AGARICUS BISPORUS [TaxId:5341]
    Database cross-references and differences (RAF-indexed):
    • PDB 2Y9X (Start-149)
  • Chain 'F':
    Compound: lectin-like fold protein
    Species: AGARICUS BISPORUS [TaxId:5341]
    Database cross-references and differences (RAF-indexed):
    • PDB 2Y9X (Start-149)
  • Chain 'G':
    Compound: lectin-like fold protein
    Species: AGARICUS BISPORUS [TaxId:5341]
    Database cross-references and differences (RAF-indexed):
    • PDB 2Y9X (Start-149)
  • Chain 'H':
    Compound: lectin-like fold protein
    Species: AGARICUS BISPORUS [TaxId:5341]
    Database cross-references and differences (RAF-indexed):
    • PDB 2Y9X (Start-149)
  • Heterogens: CU, HO, 0TR, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >2y9xA (A:)
sdkkslmplvgipgeiknrlnildfvkndkfftlyvralqvlqardqsdyssffqlggih
glpytewakaqpqlhlykanycthgtvlfptwhrayestweqtlweaagtvaqrfttsdq
aewiqaakdlrqpfwdwgywpndpdfiglpdqvirdkqveitdyngtkievenpilhykf
hpieptfegdfaqwqttmrypdvqkqeniegmiagikaaapgfrewtfnmltknytwelf
snhgavvgahanslemvhntvhfligrdptldplvpghmgsvphaafdpifwmhhcnvdr
llalwqtmnydvyvsegmnreatmglipgqvltedsplepfytknqdpwqsddledwetl
gfsypdfdpvkgkskeeksvyindwvhkhyg

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >2y9xB (B:)
sdkkslmplvgipgeiknrlnildfvkndkfftlyvralqvlqardqsdyssffqlggih
glpytewakaqpqlhlykanycthgtvlfptwhrayestweqtlweaagtvaqrfttsdq
aewiqaakdlrqpfwdwgywpndpdfiglpdqvirdkqveitdyngtkievenpilhykf
hpieptfegdfaqwqttmrypdvqkqeniegmiagikaaapgfrewtfnmltknytwelf
snhgavvgahanslemvhntvhfligrdptldplvpghmgsvphaafdpifwmhhcnvdr
llalwqtmnydvyvsegmnreatmglipgqvltedsplepfytknqdpwqsddledwetl
gfsypdfdpvkgkskeeksvyindwvhkhyg

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >2y9xC (C:)
sdkkslmplvgipgeiknrlnildfvkndkfftlyvralqvlqardqsdyssffqlggih
glpytewakaqpqlhlykanycthgtvlfptwhrayestweqtlweaagtvaqrfttsdq
aewiqaakdlrqpfwdwgywpndpdfiglpdqvirdkqveitdyngtkievenpilhykf
hpieptfegdfaqwqttmrypdvqkqeniegmiagikaaapgfrewtfnmltknytwelf
snhgavvgahanslemvhntvhfligrdptldplvpghmgsvphaafdpifwmhhcnvdr
llalwqtmnydvyvsegmnreatmglipgqvltedsplepfytknqdpwqsddledwetl
gfsypdfdpvkgkskeeksvyindwvhkhyg

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >2y9xD (D:)
sdkkslmplvgipgeiknrlnildfvkndkfftlyvralqvlqardqsdyssffqlggih
glpytewakaqpqlhlykanycthgtvlfptwhrayestweqtlweaagtvaqrfttsdq
aewiqaakdlrqpfwdwgywpndpdfiglpdqvirdkqveitdyngtkievenpilhykf
hpieptfegdfaqwqttmrypdvqkqeniegmiagikaaapgfrewtfnmltknytwelf
snhgavvgahanslemvhntvhfligrdptldplvpghmgsvphaafdpifwmhhcnvdr
llalwqtmnydvyvsegmnreatmglipgqvltedsplepfytknqdpwqsddledwetl
gfsypdfdpvkgkskeeksvyindwvhkhyg

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2y9xE (E:)
maqarkipldlpgtrilnganwannsatenlatnsgtliifdqstpgqdadrwlihnyld
gykifnmgsnnwasvsrgntvlgvsefdgqtckwsieysgngeefwirvpreggggavwt
ikpassqgpttvfldllketdpnqrikfav

    Sequence, based on observed residues (ATOM records):
    >2y9xE (E:)
ldlpgtrilnganwannsatsgtliifdqstpgqdadrwlihnyldgykifnmgsnnwas
vsrgntvlgvsefdgqtckwsieysgngeefwirvpreggggavwtikpassqgpttvfl
dllketdpnqrikfav

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2y9xF (F:)
maqarkipldlpgtrilnganwannsatenlatnsgtliifdqstpgqdadrwlihnyld
gykifnmgsnnwasvsrgntvlgvsefdgqtckwsieysgngeefwirvpreggggavwt
ikpassqgpttvfldllketdpnqrikfav

    Sequence, based on observed residues (ATOM records):
    >2y9xF (F:)
ldlpgtrilnganwannsatsgtliifdqstpgqdadrwlihnyldgykifnmgsnnwas
vsrgntvlgvsefdgqtckwsieysgngeefwirvpreggggavwtikpassqgpttvfl
dllketdpnqrikfav

  • Chain 'G':
    Sequence, based on SEQRES records:
    >2y9xG (G:)
maqarkipldlpgtrilnganwannsatenlatnsgtliifdqstpgqdadrwlihnyld
gykifnmgsnnwasvsrgntvlgvsefdgqtckwsieysgngeefwirvpreggggavwt
ikpassqgpttvfldllketdpnqrikfav

    Sequence, based on observed residues (ATOM records):
    >2y9xG (G:)
ldlpgtrilnganwannsatsgtliifdqstpgqdadrwlihnyldgykifnmgsnnwas
vsrgntvlgvsefdgqtckwsieysgngeefwirvpreggggavwtikpassqgpttvfl
dllketdpnqrikfav

  • Chain 'H':
    Sequence, based on SEQRES records:
    >2y9xH (H:)
maqarkipldlpgtrilnganwannsatenlatnsgtliifdqstpgqdadrwlihnyld
gykifnmgsnnwasvsrgntvlgvsefdgqtckwsieysgngeefwirvpreggggavwt
ikpassqgpttvfldllketdpnqrikfav

    Sequence, based on observed residues (ATOM records):
    >2y9xH (H:)
ldlpgtrilnganwannsatsgtliifdqstpgqdadrwlihnyldgykifnmgsnnwas
vsrgntvlgvsefdgqtckwsieysgngeefwirvpreggggavwtikpassqgpttvfl
dllketdpnqrikfav