PDB entry 2y9h

View 2y9h on RCSB PDB site
Description: structure a of crispr endoribonuclease cse3 bound to 19 nt RNA
Class: hydrolase/RNA
Keywords: hydrolase-RNA complex, ferredoxin-like
Deposited on 2011-02-14, released 2011-05-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-06-15, with a file datestamp of 2011-06-10.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.232
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: cse3
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q53WG9 (4-214)
      • expression tag (2-3)
    Domains in SCOPe 2.08: d2y9ha1, d2y9ha2, d2y9ha3
  • Chain 'B':
    Compound: 5'-r(*up*cp*cp*cp*cp*ap*cp*gp*cp*gp*up*gp*up*gp *gp*gp*dgp*ap*up)-3'
  • Chain 'C':
    Compound: cse3
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2y9hc1, d2y9hc2
  • Chain 'D':
    Compound: 5'-r(*up*cp*cp*cp*cp*ap*cp*gp*cp*gp*up*gp*up*gp *gp*gp*dgp*ap*up)-3'
  • Chain 'E':
    Compound: cse3
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q53WG9 (4-214)
      • expression tag (2-3)
    Domains in SCOPe 2.08: d2y9he1, d2y9he2, d2y9he3
  • Chain 'F':
    Compound: 5'-r(*up*cp*cp*cp*cp*ap*cp*gp*cp*gp*up*gp*up*gp *gp*gp*dgp*ap*up)-3'
  • Chain 'G':
    Compound: cse3
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q53WG9 (4-214)
      • expression tag (3)
    Domains in SCOPe 2.08: d2y9hg1, d2y9hg2, d2y9hg3
  • Chain 'H':
    Compound: 5'-r(*up*cp*cp*cp*cp*ap*cp*gp*cp*gp*up*gp*up*gp *gp*gp*dgp*ap*up)-3'
  • Chain 'I':
    Compound: cse3
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q53WG9 (4-214)
      • expression tag (2-3)
    Domains in SCOPe 2.08: d2y9hi1, d2y9hi2, d2y9hi3
  • Chain 'J':
    Compound: 5'-r(*up*cp*cp*cp*cp*ap*cp*gp*cp*gp*up*gp*up*gp *gp*gp*dgp*ap*up)-3'
  • Chain 'K':
    Compound: cse3
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q53WG9 (4-214)
      • expression tag (3)
    Domains in SCOPe 2.08: d2y9hk1, d2y9hk2, d2y9hk3
  • Chain 'L':
    Compound: 5'-r(*up*cp*cp*cp*cp*ap*cp*gp*cp*gp*up*gp*up*gp *gp*gp*dgp*ap*up)-3'
  • Chain 'M':
    Compound: cse3
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q53WG9 (4-214)
      • expression tag (2-3)
    Domains in SCOPe 2.08: d2y9hm1, d2y9hm2, d2y9hm3
  • Chain 'N':
    Compound: 5'-r(*up*cp*cp*cp*cp*ap*cp*gp*cp*gp*up*gp*up*gp *gp*gp*dgp*ap*up)-3'
  • Chain 'O':
    Compound: cse3
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q53WG9 (4-214)
      • expression tag (3)
    Domains in SCOPe 2.08: d2y9ho1, d2y9ho2, d2y9ho3
  • Chain 'P':
    Compound: 5'-r(*up*cp*cp*cp*cp*ap*cp*gp*cp*gp*up*gp*up*gp *gp*gp*dgp*ap*up)-3'
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2y9hA (A:)
gtgamwltklvlnpasraarrdlanpyemhrtlskavsraleegrerllwrleparglep
pvvlvqtltepdwsvldegyaqvfppkpfhpalkpgqrlrfrlranpakrlaatgkrval
ktpaekvawlerrleeggfrllegergpwvqilqdtflevrrkkdgeeagkllqvqavlf
egrlevvdperalatlrrgvgpgkalglgllsvap

    Sequence, based on observed residues (ATOM records): (download) 
    >2y9hA (A:)
gamwltklvlnpasraarrdlanpyemhrtlskavsraleegrerllwrlepargleppv
vlvqtltepdwsvldegyaqvfppkpfhpalkpgqrlrfrlranpakrlaatgkrvalkt
paekvawlerrleeggfrllegergpwvqilqdtflevrrkkdgeeagkllqvqavlfeg
rlevvdperalatlrrgvgpgkalglgllsvap

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2y9hC (C:)
gtgamwltklvlnpasraarrdlanpyemhrtlskavsraleegrerllwrleparglep
pvvlvqtltepdwsvldegyaqvfppkpfhpalkpgqrlrfrlranpakrlaatgkrval
ktpaekvawlerrleeggfrllegergpwvqilqdtflevrrkkdgeeagkllqvqavlf
egrlevvdperalatlrrgvgpgkalglgllsvap

    Sequence, based on observed residues (ATOM records): (download) 
    >2y9hC (C:)
mwltklvlnpasraarrdlanpyemhrtlskavsraleegrerllwrlepargleppvvl
vqtltepdwsvldegyaqvfppkpfhpalkpgqrlrfrlranpakrlaatgkrvalktpa
ekvawlerrleeggfrllegergpwvqilqdtflevrrkkdgeeagkllqvqavlfegrl
evvdperalatlrrgvgpgkalglgllsvap

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2y9hE (E:)
gtgamwltklvlnpasraarrdlanpyemhrtlskavsraleegrerllwrleparglep
pvvlvqtltepdwsvldegyaqvfppkpfhpalkpgqrlrfrlranpakrlaatgkrval
ktpaekvawlerrleeggfrllegergpwvqilqdtflevrrkkdgeeagkllqvqavlf
egrlevvdperalatlrrgvgpgkalglgllsvap

    Sequence, based on observed residues (ATOM records): (download) 
    >2y9hE (E:)
gamwltklvlnpasraarrdlanpyemhrtlskavsraleegrerllwrlepargleppv
vlvqtltepdwsvldegyaqvfppkpfhpalkpgqrlrfrlranpakrlaatgkrvalkt
paekvawlerrleeggfrllegergpwvqilqdtflevrrkgeeagkllqvqavlfegrl
evvdperalatlrrgvgpgkalglgllsvap

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2y9hG (G:)
gtgamwltklvlnpasraarrdlanpyemhrtlskavsraleegrerllwrleparglep
pvvlvqtltepdwsvldegyaqvfppkpfhpalkpgqrlrfrlranpakrlaatgkrval
ktpaekvawlerrleeggfrllegergpwvqilqdtflevrrkkdgeeagkllqvqavlf
egrlevvdperalatlrrgvgpgkalglgllsvap

    Sequence, based on observed residues (ATOM records): (download) 
    >2y9hG (G:)
amwltklvlnpasraarrdlanpyemhrtlskavsraleegrerllwrlepppvvlvqtl
tepdwsvldegyaqvfppkpfhpalkpgqrlrfrlranpakrlaatgkrvalktpaekva
wlerrleeggfrllegergpwvqilqdtflevrrkllqvqavlfegrlevvdperalatl
rrgvgpgkalglgllsvap

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >2y9hI (I:)
gtgamwltklvlnpasraarrdlanpyemhrtlskavsraleegrerllwrleparglep
pvvlvqtltepdwsvldegyaqvfppkpfhpalkpgqrlrfrlranpakrlaatgkrval
ktpaekvawlerrleeggfrllegergpwvqilqdtflevrrkkdgeeagkllqvqavlf
egrlevvdperalatlrrgvgpgkalglgllsvap

    Sequence, based on observed residues (ATOM records): (download) 
    >2y9hI (I:)
gamwltklvlnpasraarrdlanpyemhrtlskavsraleegrerllwrlepaeppvvlv
qtltepdwsvldgyaqvfppkpfhpalkpgqrlrfrlranpakrlaatgkrvalktpaek
vawlerrleeggfrllergpwvqilqdtflellqvqavlfegrlevvdperalatlrrgv
gpgkalglgllsvap

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >2y9hK (K:)
gtgamwltklvlnpasraarrdlanpyemhrtlskavsraleegrerllwrleparglep
pvvlvqtltepdwsvldegyaqvfppkpfhpalkpgqrlrfrlranpakrlaatgkrval
ktpaekvawlerrleeggfrllegergpwvqilqdtflevrrkkdgeeagkllqvqavlf
egrlevvdperalatlrrgvgpgkalglgllsvap

    Sequence, based on observed residues (ATOM records): (download) 
    >2y9hK (K:)
amwltklvlnpasraarrdlanpyemhrtlskavsraleegrerllwrlepaeppvvlvq
tltepdwsvldegyaqvfppkpfhpalkpgqrlrfrlranpakrlaatgkrvalktpaek
vawlerrleeggfrllepwvqilqdtfleqvqavlfegrlevvdperalatlrrgvgpgk
alglgllsvap

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >2y9hM (M:)
gtgamwltklvlnpasraarrdlanpyemhrtlskavsraleegrerllwrleparglep
pvvlvqtltepdwsvldegyaqvfppkpfhpalkpgqrlrfrlranpakrlaatgkrval
ktpaekvawlerrleeggfrllegergpwvqilqdtflevrrkkdgeeagkllqvqavlf
egrlevvdperalatlrrgvgpgkalglgllsvap

    Sequence, based on observed residues (ATOM records): (download) 
    >2y9hM (M:)
gamwltklvlnpasraarrdlanpyemhrtlskavsraleegrerllwrlepppvvlvqt
ltepdwsvldegyaqvfppkpfhpalkpgqrlrfrlranpakrlaatgkrvalktpaekv
awlerrleeggfrllegpwvqilqdtflevlqvqavlfegrlevvdperalatlrrgvgp
gkalglgllsvap

  • Chain 'N':
    No sequence available.

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >2y9hO (O:)
gtgamwltklvlnpasraarrdlanpyemhrtlskavsraleegrerllwrleparglep
pvvlvqtltepdwsvldegyaqvfppkpfhpalkpgqrlrfrlranpakrlaatgkrval
ktpaekvawlerrleeggfrllegergpwvqilqdtflevrrkkdgeeagkllqvqavlf
egrlevvdperalatlrrgvgpgkalglgllsvap

    Sequence, based on observed residues (ATOM records): (download) 
    >2y9hO (O:)
amwltklvlnpasraarrdlanpyemhrtlskavsraleegrerllwrlepppvvlvqtl
tepdwsyaqvfppkpfhpalkpgqrlrfrlranpakrlaatgkrvalktpaekvawlerr
leeggfrlpwvqilqdtfavlfegrlevvdperalatlrrgvgpgkalglgllsvap

  • Chain 'P':
    No sequence available.