PDB entry 2y9a

View 2y9a on RCSB PDB site
Description: Structure of the spliceosomal U4 snRNP core domain
Deposited on 2011-02-13, released 2011-05-11
The last revision was dated 2014-12-10, with a file datestamp of 2014-12-05.
Experiment type: XRAY
Resolution: 3.6 Å
R-factor: 0.27898
AEROSPACI score: 0.05 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: small nuclear ribonucleoprotein-associated proteins b and b'
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPB
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Small nuclear ribonucleoprotein Sm D1
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPD1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Small nuclear ribonucleoprotein Sm D2
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPD2
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Small nuclear ribonucleoprotein Sm D3
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPD3
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Small nuclear ribonucleoprotein E
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPE
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Small nuclear ribonucleoprotein F
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPF
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Small nuclear ribonucleoprotein G
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPG
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: small nuclear ribonucleoprotein-associated proteins b and b'
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPB
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Small nuclear ribonucleoprotein Sm D1
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPD1
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Small nuclear ribonucleoprotein Sm D2
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPD2
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: Small nuclear ribonucleoprotein Sm D3
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPD3
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: Small nuclear ribonucleoprotein E
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPE
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: Small nuclear ribonucleoprotein F
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPF
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: Small nuclear ribonucleoprotein G
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPG
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: small nuclear ribonucleoprotein-associated proteins b and b'
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPB
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: Small nuclear ribonucleoprotein Sm D1
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPD1
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: Small nuclear ribonucleoprotein Sm D2
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPD2
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: Small nuclear ribonucleoprotein Sm D3
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPD3
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: Small nuclear ribonucleoprotein E
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPE
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: Small nuclear ribonucleoprotein F
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPF
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: Small nuclear ribonucleoprotein G
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPG
    Database cross-references and differences (RAF-indexed):
  • Chain 'V':
    Compound: homo sapiens u4a snrna
    Species: Homo sapiens [TaxId:9606]
    Gene: RNU4A
  • Chain 'X':
    Compound: homo sapiens u4a snrna
    Species: Homo sapiens [TaxId:9606]
    Gene: RNU4A
  • Chain 'Y':
    Compound: homo sapiens u4a snrna
    Species: Homo sapiens [TaxId:9606]
    Gene: RNU4A

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2y9aA (A:)
mtvgksskmlqhidyrmrcilqdgrifigtfkafdkhmnlilcdcdefrkikpknskqae
reekrvlglvllrgenlvsmtvegpppkdtgiarv

    Sequence, based on observed residues (ATOM records):
    >2y9aA (A:)
sskmlqhidyrmrcilqdgrifigtfkafdkhmnlilcdcdefrkikpknskqaereekr
vlglvllrgenlvsmtvegpppkdtgiarv

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2y9aB (B:)
mklvrflmklshetvtielkngtqvhgtitgvdvsmnthlkavkmtlknrepvqletlsi
rgnniryfilpdslpldtllvdvepkvkskkreavagrgrgrgrgrgrgrgrgrggprr

    Sequence, based on observed residues (ATOM records):
    >2y9aB (B:)
mklvrflmklshetvtielkngtqvhgtitgvdvsmnthlkavkmtlknrepvqletlsi
rgnniryfilpdslpldtllvdvepkvkskkreavag

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2y9aC (C:)
msllnkpksemtpeelqkreeeefntgplsvltqsvknntqvlincrnnkkllgrvkafd
rhcnmvlenvkemwtevpksgkgkkkskpvnkdryiskmflrgdsvivvlrnpliagk

    Sequence, based on observed residues (ATOM records):
    >2y9aC (C:)
eelqkreeeefntgplsvltqsvknntqvlincrnnkkllgrvkafdrhcnmvlenvkem
wtevpksgkgkkkskpvnkdryiskmflrgdsvivvlrnpliagk

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2y9aD (D:)
msigvpikvlheaeghivtcetntgevyrgklieaednmncqmsnitvtyrdgrvaqleq
vyirgskirflilpdmlknapmlksmknknqgsgagrgkaailkaqvaargrgrgmgrgn
ifqkrr

    Sequence, based on observed residues (ATOM records):
    >2y9aD (D:)
gvpikvlheaeghivtcetntgevyrgklieaednmncqmsnitvtyrdgrvaqleqvyi
rgskirflilpdmlknapmlksmknknqg

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2y9aE (E:)
mayrgqgqkvqkvmvqpinlifrylqnrsriqvwlyeqvnmriegciigfdeymnlvldd
aeeihsktksrkqlgrimlkgdnitllqsvsn

    Sequence, based on observed residues (ATOM records):
    >2y9aE (E:)
gqkvqkvmvqpinlifrylqnrsriqvwlyeqvnmriegciigfdeymnlvlddaeeihs
ktksrkqlgrimlkgdnitllqsvsn

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2y9aF (F:)
mslplnpkpflngltgkpvmvklkwgmeykgylvsvdgymnmqlanteeyidgalsghlg
evlircnnvlyirgveeeeedgemre

    Sequence, based on observed residues (ATOM records):
    >2y9aF (F:)
plnpkpflngltgkpvmvklkwgmeykgylvsvdgymnmqlanteeyidgalsghlgevl
ircnnvlyirgveeeeedgemre

  • Chain 'G':
    Sequence, based on SEQRES records:
    >2y9aG (G:)
mskahppelkkfmdkklslklnggrhvqgilrgfdpfmnlvidecvematsgqqnnigmv
virgnsiimlealerv

    Sequence, based on observed residues (ATOM records):
    >2y9aG (G:)
ahppelkkfmdkklslklnggrhvqgilrgfdpfmnlvidecvematsgqqnnigmvvir
gnsiimlealerv

  • Chain 'H':
    Sequence, based on SEQRES records:
    >2y9aH (H:)
mtvgksskmlqhidyrmrcilqdgrifigtfkafdkhmnlilcdcdefrkikpknskqae
reekrvlglvllrgenlvsmtvegpppkdtgiarv

    Sequence, based on observed residues (ATOM records):
    >2y9aH (H:)
ksskmlqhidyrmrcilqdgrifigtfkafdkhmnlilcdcdefrkikpknskqaereek
rvlglvllrgenlvsmtvegpppkdtgiarv

  • Chain 'I':
    Sequence, based on SEQRES records:
    >2y9aI (I:)
mklvrflmklshetvtielkngtqvhgtitgvdvsmnthlkavkmtlknrepvqletlsi
rgnniryfilpdslpldtllvdvepkvkskkreavagrgrgrgrgrgrgrgrgrggprr

    Sequence, based on observed residues (ATOM records):
    >2y9aI (I:)
klvrflmklshetvtielkngtqvhgtitgvdvsmnthlkavkmtlknrepvqletlsir
gnniryfilpdslpldtllvdvepkvkskkreavag

  • Chain 'J':
    Sequence, based on SEQRES records:
    >2y9aJ (J:)
msllnkpksemtpeelqkreeeefntgplsvltqsvknntqvlincrnnkkllgrvkafd
rhcnmvlenvkemwtevpksgkgkkkskpvnkdryiskmflrgdsvivvlrnpliagk

    Sequence, based on observed residues (ATOM records):
    >2y9aJ (J:)
tpeelqkreeeefntgplsvltqsvknntqvlincrnnkkllgrvkafdrhcnmvlenvk
emwtevpksgkgkkkskpvnkdryiskmflrgdsvivvlrnpliagk

  • Chain 'K':
    Sequence, based on SEQRES records:
    >2y9aK (K:)
msigvpikvlheaeghivtcetntgevyrgklieaednmncqmsnitvtyrdgrvaqleq
vyirgskirflilpdmlknapmlksmknknqgsgagrgkaailkaqvaargrgrgmgrgn
ifqkrr

    Sequence, based on observed residues (ATOM records):
    >2y9aK (K:)
gvpikvlheaeghivtcetntgevyrgklieaednmncqmsnitvtyrdgrvaqleqvyi
rgskirflilpdmlknapmlksmknknqg

  • Chain 'L':
    Sequence, based on SEQRES records:
    >2y9aL (L:)
mayrgqgqkvqkvmvqpinlifrylqnrsriqvwlyeqvnmriegciigfdeymnlvldd
aeeihsktksrkqlgrimlkgdnitllqsvsn

    Sequence, based on observed residues (ATOM records):
    >2y9aL (L:)
pinlifrylqnrsriqvwlyeqvnmriegciigfdeymnlvlddaeeihsktksrkqlgr
imlkgdnitllqsvsn

  • Chain 'M':
    Sequence, based on SEQRES records:
    >2y9aM (M:)
mslplnpkpflngltgkpvmvklkwgmeykgylvsvdgymnmqlanteeyidgalsghlg
evlircnnvlyirgveeeeedgemre

    Sequence, based on observed residues (ATOM records):
    >2y9aM (M:)
plnpkpflngltgkpvmvklkwgmeykgylvsvdgymnmqlanteeyidgalsghlgevl
ircnnvlyirgveeeeedgemre

  • Chain 'N':
    Sequence, based on SEQRES records:
    >2y9aN (N:)
mskahppelkkfmdkklslklnggrhvqgilrgfdpfmnlvidecvematsgqqnnigmv
virgnsiimlealerv

    Sequence, based on observed residues (ATOM records):
    >2y9aN (N:)
ahppelkkfmdkklslklnggrhvqgilrgfdpfmnlvidecvematsgqqnnigmvvir
gnsiimleale

  • Chain 'O':
    Sequence, based on SEQRES records:
    >2y9aO (O:)
mtvgksskmlqhidyrmrcilqdgrifigtfkafdkhmnlilcdcdefrkikpknskqae
reekrvlglvllrgenlvsmtvegpppkdtgiarv

    Sequence, based on observed residues (ATOM records):
    >2y9aO (O:)
skmlqhidyrmrcilqdgrifigtfkafdkhmnlilcdcdefrkikpknskqaereekrv
lglvllrgenlvsmtvegpppkdtgiarv

  • Chain 'P':
    Sequence, based on SEQRES records:
    >2y9aP (P:)
mklvrflmklshetvtielkngtqvhgtitgvdvsmnthlkavkmtlknrepvqletlsi
rgnniryfilpdslpldtllvdvepkvkskkreavagrgrgrgrgrgrgrgrgrggprr

    Sequence, based on observed residues (ATOM records):
    >2y9aP (P:)
klvrflmklshetvtielkngtqvhgtitgvdvsmnthlkavkmtlknrepvqletlsir
gnniryfilpdslpldtllvdvepkvkskkreava

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >2y9aQ (Q:)
msllnkpksemtpeelqkreeeefntgplsvltqsvknntqvlincrnnkkllgrvkafd
rhcnmvlenvkemwtevpksgkgkkkskpvnkdryiskmflrgdsvivvlrnpliagk

    Sequence, based on observed residues (ATOM records):
    >2y9aQ (Q:)
tgplsvltqsvknntqvlincrnnkkllgrvkafdrhcnmvlenvkemwtevpksgkgkk
kskpvnkdryiskmflrgdsvivvlrnpli

  • Chain 'R':
    Sequence, based on SEQRES records:
    >2y9aR (R:)
msigvpikvlheaeghivtcetntgevyrgklieaednmncqmsnitvtyrdgrvaqleq
vyirgskirflilpdmlknapmlksmknknqgsgagrgkaailkaqvaargrgrgmgrgn
ifqkrr

    Sequence, based on observed residues (ATOM records):
    >2y9aR (R:)
gvpikvlheaeghivtcetntgevyrgklieaednmncqmsnitvtyrdgrvaqleqvyi
rgskirflilpdmlknapmlksmknknqg

  • Chain 'S':
    Sequence, based on SEQRES records:
    >2y9aS (S:)
mayrgqgqkvqkvmvqpinlifrylqnrsriqvwlyeqvnmriegciigfdeymnlvldd
aeeihsktksrkqlgrimlkgdnitllqsvsn

    Sequence, based on observed residues (ATOM records):
    >2y9aS (S:)
vqpinlifrylqnrsriqvwlyeqvnmriegciigfdeymnlvlddaeeihsktksrkql
grimlkgdnitllqsvsn

  • Chain 'T':
    Sequence, based on SEQRES records:
    >2y9aT (T:)
mslplnpkpflngltgkpvmvklkwgmeykgylvsvdgymnmqlanteeyidgalsghlg
evlircnnvlyirgveeeeedgemre

    Sequence, based on observed residues (ATOM records):
    >2y9aT (T:)
plnpkpflngltgkpvmvklkwgmeykgylvsvdgymnmqlanteeyidgalsghlgevl
ircnnvlyirgveeeeedgemre

  • Chain 'U':
    Sequence, based on SEQRES records:
    >2y9aU (U:)
mskahppelkkfmdkklslklnggrhvqgilrgfdpfmnlvidecvematsgqqnnigmv
virgnsiimlealerv

    Sequence, based on observed residues (ATOM records):
    >2y9aU (U:)
ahppelkkfmdkklslklnggrhvqgilrgfdpfmnlvidecvematsgqqnnigmvvir
gnsiimlealerv

  • Chain 'V':
    No sequence available.

  • Chain 'X':
    No sequence available.

  • Chain 'Y':
    No sequence available.