PDB entry 2y8r

View 2y8r on RCSB PDB site
Description: crystal structure of apo ama1 mutant (tyr230ala) from toxoplasma gondii
Deposited on 2011-02-10, released 2011-08-03
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: apical membrane antigen, putative
    Species: Toxoplasma gondii [TaxId:5811]
    Database cross-references and differences (RAF-indexed):
    • Uniprot B9QC59
      • engineered mutation (171)
  • Chain 'B':
    Compound: apical membrane antigen, putative
    Species: Toxoplasma gondii [TaxId:5811]
    Database cross-references and differences (RAF-indexed):
    • Uniprot B9QC59
      • engineered mutation (171)
  • Chain 'D':
    Compound: apical membrane antigen, putative
    Species: Toxoplasma gondii [TaxId:5811]
    Database cross-references and differences (RAF-indexed):
    • Uniprot B9QC59
      • engineered mutation (171)
  • Chain 'E':
    Compound: apical membrane antigen, putative
    Species: Toxoplasma gondii [TaxId:5811]
    Database cross-references and differences (RAF-indexed):
    • Uniprot B9QC59
      • engineered mutation (171)
  • Heterogens: NAG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2y8rA (A:)
gsamgsastsgnpfqanvemktfmerfnlthhhqsgiyvdlgqdkevdgtlyrepaglcp
iwgkhielqqpdrppyrnnfledvptekeykqsgnplpggfnlnfvtpsgqrispfpmel
leknsnikastdlgrcaefafktvamdknnkatkyrypfvydskkrlchilavsmqlmeg
kkycsvkgeppdltwycfkprksvtenhhliygsayvgenpdafiskcpnqalrgyrfgv
wkkgrcldyteltdtvierveskaqcwvktfendgvasdqphtypltsqaswndwwplhq
sdqphsggvgrnygfyyvdttgegkcalsdqvpdclvsdsaavsytaagslseetpnfii
psnpsvtpptpetalqctadkfpdsfgacdvqackrqktscvggqiqstsvdctadeqne
cgsntaaalvpr

    Sequence, based on observed residues (ATOM records):
    >2y8rA (A:)
sgnpfqanvemktfmerfnlthhhqsgiyvdlgqdkevdgtlyrepaglcpiwgkhielq
qpdrppyrnnfledvptekeykqsgnplpggfnlnfvtpsgqrispfpmelleknsnika
stdlgrcaefafktvkatkyrypfvydskkrlchilavsmqlmegkkycsvkgeppdltw
ycfkprksvtenhhliygsayvgenpdafiskcpnqalrgyrfgvwkkgrcldyteltdt
vierveskaqcwvktfendgvasdqpltsqaswndwwplhqsdqphsggvgrnygfyyvd
ttgegkcalsdqvpdclvsdsaavsytaagslseetpnfiipsntpptpetalqctadkf
pdsfgacdvqackrqktscvggqiqstsvdctadeqnec

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2y8rB (B:)
gsamgsastsgnpfqanvemktfmerfnlthhhqsgiyvdlgqdkevdgtlyrepaglcp
iwgkhielqqpdrppyrnnfledvptekeykqsgnplpggfnlnfvtpsgqrispfpmel
leknsnikastdlgrcaefafktvamdknnkatkyrypfvydskkrlchilavsmqlmeg
kkycsvkgeppdltwycfkprksvtenhhliygsayvgenpdafiskcpnqalrgyrfgv
wkkgrcldyteltdtvierveskaqcwvktfendgvasdqphtypltsqaswndwwplhq
sdqphsggvgrnygfyyvdttgegkcalsdqvpdclvsdsaavsytaagslseetpnfii
psnpsvtpptpetalqctadkfpdsfgacdvqackrqktscvggqiqstsvdctadeqne
cgsntaaalvpr

    Sequence, based on observed residues (ATOM records):
    >2y8rB (B:)
gnpfqanvemktfmerfnlthhhqsgiyvdlgqdkevdgtlyrepaglcpiwgkhielqq
pdrppyrnnfledvptekeykqsgnplpggfnlnfvtpsgqrispfpmelleknsnikas
tdlgrcaefafktvamnkatkyrypfvydskkrlchilavsmqlmegkkycsvkgeppdl
twycfkprksvtenhhliygsayvgenpdafiskcpnqalrgyrfgvwkkgrcldytelt
dtvierveskaqcwvktfendgvasdqphtypltsqaswndwwplhqsdqphsggvgrny
gfyyvdttgegkcalsdqvpdclvsdsaavsytaagslseetpnfiipsntalqctadkf
pdsfgacdvqackrqktscvggqiqstsvdctadeqc

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2y8rD (D:)
gsamgsastsgnpfqanvemktfmerfnlthhhqsgiyvdlgqdkevdgtlyrepaglcp
iwgkhielqqpdrppyrnnfledvptekeykqsgnplpggfnlnfvtpsgqrispfpmel
leknsnikastdlgrcaefafktvamdknnkatkyrypfvydskkrlchilavsmqlmeg
kkycsvkgeppdltwycfkprksvtenhhliygsayvgenpdafiskcpnqalrgyrfgv
wkkgrcldyteltdtvierveskaqcwvktfendgvasdqphtypltsqaswndwwplhq
sdqphsggvgrnygfyyvdttgegkcalsdqvpdclvsdsaavsytaagslseetpnfii
psnpsvtpptpetalqctadkfpdsfgacdvqackrqktscvggqiqstsvdctadeqne
cgsntaaalvpr

    Sequence, based on observed residues (ATOM records):
    >2y8rD (D:)
gnpfqanvemktfmerfnlthhhqsgiyvdlgqdkevdgtlyrepaglcpiwgkhielqq
pdrppyrnnfledvptekeykqsgnplpggfnlnfvtpsgqrispfpmelleknsnikas
tdlgrcaefafktvamdknnkatkyrypfvydskkrlchilavsmqlmegkkycsvkgep
pdltwycfkprksvtenhhliygsayvgenpdafiskcpnqalrgyrfgvwkkgrcldyt
eltdtvierveskaqcwvktfendgvasdqphtypltsqaswndwwplhqsdqphsggvg
rnygfyyvdttgegkcalsdqvpdclvsdsaavsytaagslseetpnfiipspptpetal
qctadkfpdsfgacdvqackrqktscvggqiqstsvdctadeqnec

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2y8rE (E:)
gsamgsastsgnpfqanvemktfmerfnlthhhqsgiyvdlgqdkevdgtlyrepaglcp
iwgkhielqqpdrppyrnnfledvptekeykqsgnplpggfnlnfvtpsgqrispfpmel
leknsnikastdlgrcaefafktvamdknnkatkyrypfvydskkrlchilavsmqlmeg
kkycsvkgeppdltwycfkprksvtenhhliygsayvgenpdafiskcpnqalrgyrfgv
wkkgrcldyteltdtvierveskaqcwvktfendgvasdqphtypltsqaswndwwplhq
sdqphsggvgrnygfyyvdttgegkcalsdqvpdclvsdsaavsytaagslseetpnfii
psnpsvtpptpetalqctadkfpdsfgacdvqackrqktscvggqiqstsvdctadeqne
cgsntaaalvpr

    Sequence, based on observed residues (ATOM records):
    >2y8rE (E:)
gnpfqanvemktfmerfnlthhhqsgiyvdlgqdkevdgtlyrepaglcpiwgkhielqq
pdrppyrnnfledvptekeykqsgnplpggfnlnfvtpsgqrispfpmelleknsnikas
tdlgrcaefafktvamdkatkyrypfvydskkrlchilavsmqlmegkkycsvkgeppdl
twycfkprksvtenhhliygsayvgenpdafiskcpnqalrgyrfgvwkkgrcldytelt
dtvierveskaqcwvktfendgvasdqphtypltsqaswndwwplhqsdqphsggvgrny
gfyyvdttgegkcalsdqvpdclvsdsaavsytaagslseetpnfiipstalqctadkfp
dsfgacdckrqktscvggqiqstsvdctadeqne