PDB entry 2y8n

View 2y8n on RCSB PDB site
Description: crystal structure of glycyl radical enzyme
Deposited on 2011-02-08, released 2011-09-21
The last revision was dated 2019-10-16, with a file datestamp of 2019-10-11.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 4-hydroxyphenylacetate decarboxylase large subunit
    Species: CLOSTRIDIUM SCATOLOGENES [TaxId:1548]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: 4-hydroxyphenylacetate decarboxylase small subunit
    Species: CLOSTRIDIUM SCATOLOGENES [TaxId:1548]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: 4-hydroxyphenylacetate decarboxylase large subunit
    Species: CLOSTRIDIUM SCATOLOGENES [TaxId:1548]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 4-hydroxyphenylacetate decarboxylase small subunit
    Species: CLOSTRIDIUM SCATOLOGENES [TaxId:1548]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SF4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2y8nA (A:)
mnvketkledvlksrgidmkdayniseadipeakestqklmdiyytlkvtadmeaaywyn
rtwwendgevievrrakavaaslshmtptilpyeklvmnktknvrgafpfpwvcasffna
qaealmnevdapaeneadsvsvvgagggnvtesygnvisiakkfgmrkeeipvlvktskp
wegisveelsnkyskmtpgydqfknimesvicmfdsfaipqgrevinyymplqygfdgii
klcdekiaevmgeagddgdfgmsrgyyyaamkeitkglsawcenyskrakylasietdse
ikanyekieevmgniahkkpanfweaiqmtlcchfgvvnedpqsglsigrlgqvlqpfye
kdvedgimtdeeviellelyrikitciecfasagvsggvlsgntfnnlslggqnydglsa
vtpleyliveagmrnqtpqptlsvlydektpedflmkaasctklglgypawmnnqtgmnf
mmrnygpegmdlhdarawclggclesapgcflpleyngkvtmipggasptcgtgvhfigm
pkvlelvltngldkrtgkqvypphnkkldsyetmvnqwkeymelttdvvnrcnniqmdiw
rkynmpavnsllkpdcfkkgkhigtmgarynscinfescgtitfvnslssikknvfddsk
ftieemtdamlnnfgfktayetevfspdfrestdkstkyekifaacvnapkygnadkyad
eifkayhyyiydmthkfrsyygkplylcqisvsthgpqgfvtlatadgrlagttysdgsv
saaagtdkngiyaifesatvydhsmhqnaqmnlklhptavkgingtrklldlvraymrkg
gfhvqfnvvdsktlrdaqltpekyrelmvrvagftqywceigkpiqdeviyrteydk

    Sequence, based on observed residues (ATOM records):
    >2y8nA (A:)
dipeakestqklmdiyytlkvtadmeaaywynrtwwendgevievrrakavaaslshmtp
tilpyeklvmnktknvrgafpfpwvcasffnaqaealmnevdapaeneadsvsvvgaggg
nvtesygnvisiakkfgmrkeeipvlvktskpwegisveelsnkyskmtpgydqfknime
svicmfdsfaipqgrevinyymplqygfdgiiklcdekiaevmgeagddgdfgmsrgyyy
aamkeitkglsawcenyskrakylasietdseikanyekieevmgniahkkpanfweaiq
mtlcchfgvvnedpqsglsigrlgqvlqpfyekdvedgimtdeeviellelyrikitcie
cfasagvsggvlsgntfnnlslggqnydglsavtpleyliveagmrnqtpqptlsvlyde
ktpedflmkaasctklglgypawmnnqtgmnfmmrnygpegmdlhdarawclggclesap
gcflpleyngkvtmipggasptcgtgvhfigmpkvlelvltngldkrtgkqvypphnkkl
dsyetmvnqwkeymelttdvvnrcnniqmdiwrkynmpavnsllkpdcfkkgkhigtmga
rynscinfescgtitfvnslssikknvfddskftieemtdamlnnfgfktayetevfspd
frestdkstkyekifaacvnapkygnadkyadeifkayhyyiydmthkfrsyygkplylc
qisvsthgpqgfvtlatadgrlagttysdgsvsaaagtdkngiyaifesatvydhsmhqn
aqmnlklhptavkgingtrklldlvraymrkggfhvqfnvvdsktlrdaqltpekyrelm
vrvagftqywceigkpiqdeviyrteydk

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >2y8nB (B:)
mrhydcknyinldcekglcaltkgmvpidgegseacpnfkpaekcgncknfcnpdkyglg
tctglekenwayatcgasacpsykae

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2y8nC (C:)
mnvketkledvlksrgidmkdayniseadipeakestqklmdiyytlkvtadmeaaywyn
rtwwendgevievrrakavaaslshmtptilpyeklvmnktknvrgafpfpwvcasffna
qaealmnevdapaeneadsvsvvgagggnvtesygnvisiakkfgmrkeeipvlvktskp
wegisveelsnkyskmtpgydqfknimesvicmfdsfaipqgrevinyymplqygfdgii
klcdekiaevmgeagddgdfgmsrgyyyaamkeitkglsawcenyskrakylasietdse
ikanyekieevmgniahkkpanfweaiqmtlcchfgvvnedpqsglsigrlgqvlqpfye
kdvedgimtdeeviellelyrikitciecfasagvsggvlsgntfnnlslggqnydglsa
vtpleyliveagmrnqtpqptlsvlydektpedflmkaasctklglgypawmnnqtgmnf
mmrnygpegmdlhdarawclggclesapgcflpleyngkvtmipggasptcgtgvhfigm
pkvlelvltngldkrtgkqvypphnkkldsyetmvnqwkeymelttdvvnrcnniqmdiw
rkynmpavnsllkpdcfkkgkhigtmgarynscinfescgtitfvnslssikknvfddsk
ftieemtdamlnnfgfktayetevfspdfrestdkstkyekifaacvnapkygnadkyad
eifkayhyyiydmthkfrsyygkplylcqisvsthgpqgfvtlatadgrlagttysdgsv
saaagtdkngiyaifesatvydhsmhqnaqmnlklhptavkgingtrklldlvraymrkg
gfhvqfnvvdsktlrdaqltpekyrelmvrvagftqywceigkpiqdeviyrteydk

    Sequence, based on observed residues (ATOM records):
    >2y8nC (C:)
dipeakestqklmdiyytlkvtadmeaaywynrtwwendgevievrrakavaaslshmtp
tilpyeklvmnktknvrgafpfpwvcasffnaqaealmnevdapaeneadsvsvvgaggg
nvtesygnvisiakkfgmrkeeipvlvktskpwegisveelsnkyskmtpgydqfknime
svicmfdsfaipqgrevinyymplqygfdgiiklcdekiaevmgeagddgdfgmsrgyyy
aamkeitkglsawcenyskrakylasietdseikanyekieevmgniahkkpanfweaiq
mtlcchfgvvnedpqsglsigrlgqvlqpfyekdvedgimtdeeviellelyrikitcie
cfasagvsggvlsgntfnnlslggqnydglsavtpleyliveagmrnqtpqptlsvlyde
ktpedflmkaasctklglgypawmnnqtgmnfmmrnygpegmdlhdarawclggclesap
gcflpleyngkvtmipggasptcgtgvhfigmpkvlelvltngldkrtgkqvypphnkkl
dsyetmvnqwkeymelttdvvnrcnniqmdiwrkynmpavnsllkpdcfkkgkhigtmga
rynscinfescgtitfvnslssikknvfddskftieemtdamlnnfgfktayetevfspd
frestdkstkyekifaacvnapkygnadkyadeifkayhyyiydmthkfrsyygkplylc
qisvsthgpqgfvtlatadgrlagttysdgsvsaaagtdkngiyaifesatvydhsmhqn
aqmnlklhptavkgingtrklldlvraymrkggfhvqfnvvdsktlrdaqltpekyrelm
vrvagftqywceigkpiqdeviyrteydk

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >2y8nD (D:)
mrhydcknyinldcekglcaltkgmvpidgegseacpnfkpaekcgncknfcnpdkyglg
tctglekenwayatcgasacpsykae