PDB entry 2y48

View 2y48 on RCSB PDB site
Description: crystal structure of lsd1-corest in complex with a n-terminal snail peptide
Deposited on 2011-01-05, released 2011-02-16
The last revision was dated 2011-02-16, with a file datestamp of 2011-02-11.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.21296
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: lysine-specific demethylase 1a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: rest corepressor 1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: zinc finger protein snai1
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: FAD

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2y48A (A:)
mdeslanlsedeyyseeernakaekekklpppppqappeeenesepeepsgvegaafqsr
lphdrmtsqeaacfpdiisgpqqtqkvflfirnrtlqlwldnpkiqltfeatlqqleapy
nsdtvlvhrvhsylerhglinfgiykrikplptkktgkviiigsgvsglaaarqlqsfgm
dvtlleardrvggrvatfrkgnyvadlgamvvtglggnpmavvskqvnmelakikqkcpl
yeangqavpkekdemveqefnrlleatsylshqldfnvlnnkpvslgqalevviqlqekh
vkdeqiehwkkivktqeelkellnkmvnlkekikelhqqykeasevkpprditaeflvks
khrdltalckeydelaetqgkleeklqeleanppsdvylssrdrqildwhfanlefanat
plstlslkhwdqdddfeftgshltvrngyscvpvalaegldiklntavrqvrytasgcev
iavntrstsqtfiykcdavlctlplgvlkqqppavqfvpplpewktsavqrmgfgnlnkv
vlcfdrvfwdpsvnlfghvgsttasrgelflfwnlykapillalvageaagimenisddv
ivgrclailkgifgssavpqpketvvsrwradpwargsysyvaagssgndydlmaqpitp
gpsipgapqpiprlffagehtirnypatvhgallsglreagriadqflgamytlprqatp
gvpaqqspsm

    Sequence, based on observed residues (ATOM records):
    >2y48A (A:)
sgvegaafqsrlphdrmtsqeaacfpdiisgpqqtqkvflfirnrtlqlwldnpkiqltf
eatlqqleapynsdtvlvhrvhsylerhglinfgiykrikplptkktgkviiigsgvsgl
aaarqlqsfgmdvtlleardrvggrvatfrkgnyvadlgamvvtglggnpmavvskqvnm
elakikqkcplyeangqavpkekdemveqefnrlleatsylshqldfnvlnnkpvslgqa
levviqlqekhvkdeqiehwkkivktqeelkellnkmvnlkekikelhqqykeasevkpp
rditaeflvkskhrdltalckeydelaetqgkleeklqeleanppsdvylssrdrqildw
hfanlefanatplstlslkhwdqdddfeftgshltvrngyscvpvalaegldiklntavr
qvrytasgceviavntrstsqtfiykcdavlctlplgvlkqqppavqfvpplpewktsav
qrmgfgnlnkvvlcfdrvfwdpsvnlfghvgsttasrgelflfwnlykapillalvagea
agimenisddvivgrclailkgifgssavpqpketvvsrwradpwargsysyvaagssgn
dydlmaqpitpgpsipgapqpiprlffagehtirnypatvhgallsglreagriadqflg
amytl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2y48B (B:)
rakrkppkgmflsqedveavsanataattvlrqldmelvsvkrqiqnikqtnsalkekld
ggiepyrlpeviqkcnarwtteeqllavqairkygrdfqaisdvignksvvqvknffvny
rrrfnidevlqeweaehgkeetngpsnqkpvkspdnsikmpeeedeapvldvryasas

    Sequence, based on observed residues (ATOM records):
    >2y48B (B:)
rkppkgmflsqedveavsanataattvlrqldmelvsvkrqiqnikqtnsalkekldggi
epyrlpeviqkcnarwtteeqllavqairkygrdfqaisdvignksvvqvknffvnyrrr
fnidevlqeweae

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2y48C (C:)
prsflvrkpsdpnrkpnyse

    Sequence, based on observed residues (ATOM records):
    >2y48C (C:)
prsflvrkp