SCOPe 2.08: Structural Classification of Proteins

PDB entry 2y3t

View 2y3t on RCSB PDB site
Description: mutant (k220e) of the hsdr subunit of the ecor124i restriction enzyme in complex with atp
Deposited on 2010-12-24, released 2011-12-07
The last revision was dated 2014-03-26, with a file datestamp of 2014-03-21.
Experiment type: XRAY
Resolution: 2.99 Å
R-factor: 0.27817
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: type I restriction enzyme ecor124ii r protein
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P10486
  - engineered mutation (219)
Chain 'B':
Compound: type I restriction enzyme ecor124ii r protein
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P10486
  - engineered mutation (219)
Chain 'C':
Compound: type I restriction enzyme ecor124ii r protein
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P10486
Chain 'D':
Compound: type I restriction enzyme ecor124ii r protein
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P10486
  - engineered mutation (219)
Heterogens: ATP, MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

Chain 'A':
Sequence, based on SEQRES records:

>2y3tA (A:)
mthqthtiaesnnfivldkyikaeptgdsyqsesdlereliqdlrnqgyefisvksqsam
lanvreqlqnlngvvfndsewrrfteqyldnpsdgildktrkihidyicdfifdderlen
iylidkknlmrnkvqiiqqfeqagshanrydvtilvnglplvqielkkrgvaireafnqi
hryskesfnsenslfkylqlfvisngtdtryfanttkrdensfdftmnwaksdntlikdl
kdftatcfqkhtllnvlvnysvfdssqtllvmrpyqiaaterilwkikssftaknwskpe
sggyiwhttgsgktltsfkaarlateldfidkvffvvdrkdldyqtmkeyqrfspdsvng
sentaglkrnldkddnkiivttiqklnnlmkaesdlpvynqqvvfifdechrsqfgeaqk
nlkkkfkryyqfgftgtpifpenalgsettasvfgrelhsyvitdairdekvlkfkvdyn
dvrpqfksletetdekklsaaenqqaflhpmriqeitqyilnnfrqkthrtfpgskgfna
mlavssvdaakayyatfkrlqeeaanksatykplriatifsfaaneeqnaigeisdetfd
tsamdssakefldaaireynshfktnfstdsngfqnyyrdlaqrvknqdidllivvgmfl
tgfdaptlntlfvdknlryhglmqafsrtnriydatktfgnivtfrdlerstidaitlfg
dkntknvvleksyteymegftdaatgeakrgfmtvvseleqrfpdptsiesekekkdfvk
lfgeylraenilqnydefatlkalqqidlsdpvavekfkaehyvddekfaelqtirlpad
rkiqdyrsayndirdwqrrekeaekkeksttdwddvvfevdllksqeinldyilglifeh
nrqnkgkgemieevkrlirsslgnrakeglvvdfiqqtnlddlpdkasiidafftfaqre
qqreaealikeenlnedaakryirtslkreyatengtelnetlpklsplnpqyktkkqav
frkssrllrslka

Sequence, based on observed residues (ATOM records):

>2y3tA (A:)
fivldkyikaeptgdsyqsesdlereliqdlrnqgyefisvksqsamlanvreqlqnlng
vvfndsewrrfteqyldnpsdgildktrkihidyicdfifdderleniylidkknlmrnk
vqiiqqrydvtilvnglplvqielkkrgvaireafnqienslfkylqlfvisngtdtryf
anttkrdensfdftmnwaksdntlikdlkdftatcfqkhtllnvlvnysvfdssqtllvm
rpyqiaaterilwkikssftaknwskpesggyiwhttgsgktltsfkaarlateldfidk
vffvvdrkdldyqtmkeyqrfspdsvngsentaglkrnldkddnkiivttiqklnnlmka
esdlpvynqqvvfifdechrsqfgeaqknlkkkfkryyqfgftgtpifpenalgsettas
vfgrelhsyvitdairdekvlkfkvdyndvrpqfksletetdekklsaaenqqaflhpmr
iqeitqyilnnfrqkthrtfpgskgfnamlavssvdaakayyatfkrlqeeaanksatyk
plriatifsfaisdetfdtdssakefldaaireynshfktnfstdsngfqnyyrdlaqrv
knqdidllivvgmfltgfdaptlntlfvdknlryhglmqafsrtnriydatktfgnivtf
rdlerstidaitlfgdkntknvvleksyteymegftdgeakrgfmtvvseleqrfpseke
kkdfvklfgeylraenilqnydefatlkalqavekfkaehyvddekfaelqtirlpadrk
iqdyrsayndirdwqrrwddvvfevdllksq

Chain 'B':
Sequence, based on SEQRES records:

>2y3tB (B:)
mthqthtiaesnnfivldkyikaeptgdsyqsesdlereliqdlrnqgyefisvksqsam
lanvreqlqnlngvvfndsewrrfteqyldnpsdgildktrkihidyicdfifdderlen
iylidkknlmrnkvqiiqqfeqagshanrydvtilvnglplvqielkkrgvaireafnqi
hryskesfnsenslfkylqlfvisngtdtryfanttkrdensfdftmnwaksdntlikdl
kdftatcfqkhtllnvlvnysvfdssqtllvmrpyqiaaterilwkikssftaknwskpe
sggyiwhttgsgktltsfkaarlateldfidkvffvvdrkdldyqtmkeyqrfspdsvng
sentaglkrnldkddnkiivttiqklnnlmkaesdlpvynqqvvfifdechrsqfgeaqk
nlkkkfkryyqfgftgtpifpenalgsettasvfgrelhsyvitdairdekvlkfkvdyn
dvrpqfksletetdekklsaaenqqaflhpmriqeitqyilnnfrqkthrtfpgskgfna
mlavssvdaakayyatfkrlqeeaanksatykplriatifsfaaneeqnaigeisdetfd
tsamdssakefldaaireynshfktnfstdsngfqnyyrdlaqrvknqdidllivvgmfl
tgfdaptlntlfvdknlryhglmqafsrtnriydatktfgnivtfrdlerstidaitlfg
dkntknvvleksyteymegftdaatgeakrgfmtvvseleqrfpdptsiesekekkdfvk
lfgeylraenilqnydefatlkalqqidlsdpvavekfkaehyvddekfaelqtirlpad
rkiqdyrsayndirdwqrrekeaekkeksttdwddvvfevdllksqeinldyilglifeh
nrqnkgkgemieevkrlirsslgnrakeglvvdfiqqtnlddlpdkasiidafftfaqre
qqreaealikeenlnedaakryirtslkreyatengtelnetlpklsplnpqyktkkqav
frkssrllrslka

Sequence, based on observed residues (ATOM records):

>2y3tB (B:)
nnfivldkyikaeptgdsyqsesdlereliqdlrnqgyefisvksqsamlanvreqlqnl
ngvvfndsewrrfteqyldnpsdgildktrkihidyicdfifdderleniylidkknlmr
nkvqiiqqfrydvtilvnglplvqielkkrgvaireafnqisenslfkylqlfvisngtd
tryfanensfdftmnwaksdntlikdlkdftatcfqkhtllnvlvnysvfdssqtllvmr
pyqiaaterilwkikssftaknwskpesggyiwhttgsgktltsfkaarlateldfidkv
ffvvdrkdldyqtmkeyqrfspdsvngsentaglkrnldkddnkiivttiqklnnlmkae
sdlpvynqqvvfifdecqfgeaqknlkkkfkryyqfgftgtpifpenalgsettasvfgr
elhsyvitdairdekvlkfkvdyndvrpqfksletetdekklsaaenqqaflhpmriqei
tqyilnnfrqkthrtfpgskgfnamlavssvdaakayyatfkrlqeeaanksatykplri
atifsfaeisdetfdtakefldaaireynshfktnfstdsngfqnyyrdlaqrvknqdid
llivvgmfltgfdaptlntlfvdknlryhglmqafsrtnriydatktfgnivtfrdlers
tidaitlfgdkntknvvleksyteymegftdgeakrgfmtvvseleqrfpdsekekkdfv
klfgeylraenilqnydefatlkalvavekfkaehyvddekfaelqtirlpadrkiqdyr
sayndirdwqrrtdwddvvfevdllksqeinldy

Chain 'C':
Sequence, based on SEQRES records:

>2y3tC (C:)
mthqthtiaesnnfivldkyikaeptgdsyqsesdlereliqdlrnqgyefisvksqsam
lanvreqlqnlngvvfndsewrrfteqyldnpsdgildktrkihidyicdfifdderlen
iylidkknlmrnkvqiiqqfeqagshanrydvtilvnglplvqielkkrgvaireafnqi
hryskesfnsenslfkylqlfvisngtdtryfanttkrdensfdftmnwaksdntlikdl
kdftatcfqkhtllnvlvnysvfdssqtllvmrpyqiaaterilwkikssftaknwskpe
sggyiwhttgsgktltsfkaarlateldfidkvffvvdrkdldyqtmkeyqrfspdsvng
sentaglkrnldkddnkiivttiqklnnlmkaesdlpvynqqvvfifdechrsqfgeaqk
nlkkkfkryyqfgftgtpifpenalgsettasvfgrelhsyvitdairdekvlkfkvdyn
dvrpqfksletetdekklsaaenqqaflhpmriqeitqyilnnfrqkthrtfpgskgfna
mlavssvdaakayyatfkrlqeeaanksatykplriatifsfaaneeqnaigeisdetfd
tsamdssakefldaaireynshfktnfstdsngfqnyyrdlaqrvknqdidllivvgmfl
tgfdaptlntlfvdknlryhglmqafsrtnriydatktfgnivtfrdlerstidaitlfg
dkntknvvleksyteymegftdaatgeakrgfmtvvseleqrfpdptsiesekekkdfvk
lfgeylraenilqnydefatlkalqqidlsdpvavekfkaehyvddekfaelqtirlpad
rkiqdyrsayndirdwqrrekeaekkeksttdwddvvfevdllksqeinldyilglifeh
nrqnkgkgemieevkrlirsslgnrakeglvvdfiqqtnlddlpdkasiidafftfaqre
qqreaealikeenlnedaakryirtslkreyatengtelnetlpklsplnpqyktkkqav
frkssrllrslka

Sequence, based on observed residues (ATOM records):

>2y3tC (C:)
nfivldkyikaeptgdsyqsesdlereliqdlrnqgyefisvksqsamlanvreqlqnln
gvvfndsewrrfteqyldnpsdgildktrkihidyicdfifdderleniylidkknlmrn
kvqiiqqfrydvtilvnglplvqielkkrgvaireafnqinslfkylqlfvisngtdtry
fanttnsfdftmnwaksdntlikdlkdftatcfqkhtllnvlvnysvfdssqtllvmrpy
qiaaterilwkikssftaknwskpesggyiwhttgsgktltsfkaarlateldfidkvff
vvdrkdldyqtmkeyqrfspdsvngsentaglkrnldkddnkiivttiqklnnlmkaesd
lpvynqqvvfifdechrsqfgeaqknlkkkfkryyqfgftgtpifpenalgsettasvfg
relhsyvitdairdekvlkfkvdyndvrpqfksletetdekklsaaenqqaflhpmriqe
itqyilnnfrqkthrtfpgskgfnamlavssvdaakayyatfkrlqeeaanksatykplr
iatifsfaisdetfdtdssakefldaaireynshfktnfstdsngfqnyyrdlaqrvknq
didllivvgmfltgfdaptlntlfvdknlryhglmqafsrtnriydatktfgnivtfrdl
erstidaitlfgdkntknvvleksyteymegftdakrgfmtvvseleqrfpiesekekkd
fvklfgeylraenilqnydefatlkalqavekfkaehyvddekfaelqtirlpadrkiqd
yrsayndirdwqrdvvfevdllks

Chain 'D':
Sequence, based on SEQRES records:

>2y3tD (D:)
mthqthtiaesnnfivldkyikaeptgdsyqsesdlereliqdlrnqgyefisvksqsam
lanvreqlqnlngvvfndsewrrfteqyldnpsdgildktrkihidyicdfifdderlen
iylidkknlmrnkvqiiqqfeqagshanrydvtilvnglplvqielkkrgvaireafnqi
hryskesfnsenslfkylqlfvisngtdtryfanttkrdensfdftmnwaksdntlikdl
kdftatcfqkhtllnvlvnysvfdssqtllvmrpyqiaaterilwkikssftaknwskpe
sggyiwhttgsgktltsfkaarlateldfidkvffvvdrkdldyqtmkeyqrfspdsvng
sentaglkrnldkddnkiivttiqklnnlmkaesdlpvynqqvvfifdechrsqfgeaqk
nlkkkfkryyqfgftgtpifpenalgsettasvfgrelhsyvitdairdekvlkfkvdyn
dvrpqfksletetdekklsaaenqqaflhpmriqeitqyilnnfrqkthrtfpgskgfna
mlavssvdaakayyatfkrlqeeaanksatykplriatifsfaaneeqnaigeisdetfd
tsamdssakefldaaireynshfktnfstdsngfqnyyrdlaqrvknqdidllivvgmfl
tgfdaptlntlfvdknlryhglmqafsrtnriydatktfgnivtfrdlerstidaitlfg
dkntknvvleksyteymegftdaatgeakrgfmtvvseleqrfpdptsiesekekkdfvk
lfgeylraenilqnydefatlkalqqidlsdpvavekfkaehyvddekfaelqtirlpad
rkiqdyrsayndirdwqrrekeaekkeksttdwddvvfevdllksqeinldyilglifeh
nrqnkgkgemieevkrlirsslgnrakeglvvdfiqqtnlddlpdkasiidafftfaqre
qqreaealikeenlnedaakryirtslkreyatengtelnetlpklsplnpqyktkkqav
frkssrllrslka

Sequence, based on observed residues (ATOM records):

>2y3tD (D:)
fivldkyikaeptgdsyqsesdlereliqdlrnqgyefisvksqsamlanvreqlqnlng
vvfndsewrrfteqyldnpsdgildktrkihidyicdfifdderleniylidkknlmrnk
vqiiqqfydvtilvnglplvqielkkrgvaireafnqinslfkylqlfvisngtdtryfa
nttkrdensfdftmnwaksdntlikdlkdftatcfqkhtllnvlvnysvfdssqtllvmr
pyqiaaterilwkikssftaknwskpesggyiwhttgsgktltsfkaarlateldfidkv
ffvvdrkdldyqtmkeyqrfspdsvngsentaglkrnldkddnkiivttiqklnnlmkae
sdlpvynqqvvfifdechrsqfgeaqknlkkkfkryyqfgftgtpifpenalgsettasv
fgrelhsyvitdairdekvlkfkvdyndvrpqfksletetdekklsaaenqqaflhpmri
qeitqyilnnfrqkthrkgfnamlavssvdaakayyatfkrlqeeaanksatykplriat
ifsgeisdetfdtdssakefldaaireynshfktnfstdsngfqnyyrdlaqrvknqdid
llivvgmfltgfdaptlntlfvdknlryhglmqafsrtnriydatktfgnivtfrdlers
tidaitlfgdkntknvvleksyteymegftdakrgfmtvvseleqrfpdptsisekekkd
fvklfgeylraenilqnydefatlkalqavekfkaehyvddekfaelqtirlpadrkiqd
yrsayndirdwqrrwddvvfevdll