PDB entry 2y3p

View 2y3p on RCSB PDB site
Description: Crystal structure of N-terminal domain of GyrA with the antibiotic simocyclinone D8
Class: isomerase
Keywords: isomerase, aminocoumarin antibiotic
Deposited on 2010-12-22, released 2010-12-29
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-07-12, with a file datestamp of 2017-07-07.
Experiment type: XRAY
Resolution: 2.62 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA gyrase subunit A
    Species: ESCHERICHIA COLI [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2y3pa_
  • Chain 'B':
    Compound: DNA gyrase subunit A
    Species: ESCHERICHIA COLI [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2y3pb_
  • Heterogens: MG, SM8, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2y3pA (A:)
sdlareitpvnieeelkssyldyamsvivgralpdvrdglkpvhrrvlyamnvlgndwnk
aykksarvvgdvigkyhphgdsavydtivrmaqpfslrymlvdgqgnfgsidgdsaaamr
yteirlakiahelmadleketvdfvdnydgtekipdvmptkipnllvngssgiavgmatn
ipphnltevingclayiddedisieglmehipgpdfptaaiingrrgieeayrtgrgkvy
iraraevevdaktgretiivheipyqvnkarliekiaelvkekrvegisalrdesdkdgm
rivievkrdavgevvlnnlysqtqlqvsfginmvalhhgqpkimnlkdiiaafvrhrrev
vtrrtifelrkardrahilealavalanidpiielirhaptpaeaktalvanpwqlgnva
amleragddaarpewlepefgvrdglyylteqqaqaildlrlqkltgleheklldeykel
ldqiaellrilgsadrlmevireelelvreqfgdkrrteita

    Sequence, based on observed residues (ATOM records): (download) 
    >2y3pA (A:)
dyamsvivgralpdvrdglkpvhrrvlyamnvlgndwnkaykksarvvgdvigkyhphgd
savydtivrmaqpfslrymlvdgqgnfgsidgdsaaamryteirlakiahelmadleket
vdfvdnydgtekipdvmptkipnllvngssgiavgmatnipphnltevingclayidded
isieglmehipgpdfptaaiingrrgieeayrtgrgkvyiraraevevdaktgretiivh
eipyqvnkarliekiaelvkekrvegisalrdesdkdgmrivievkrdavgevvlnnlys
qtqlqvsfginmvalhhgqpkimnlkdiiaafvrhrrevvtrrtifelrkardrahilea
lavalanidpiielirhaptpaeaktalvanpwqlgnvaamledaarpewlepefgvrdg
lyylteqqaqaildlrlqkltgleheklldeykelldqiaellrilgsadrlmevireel
elvreqfgdkrrteit

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2y3pB (B:)
sdlareitpvnieeelkssyldyamsvivgralpdvrdglkpvhrrvlyamnvlgndwnk
aykksarvvgdvigkyhphgdsavydtivrmaqpfslrymlvdgqgnfgsidgdsaaamr
yteirlakiahelmadleketvdfvdnydgtekipdvmptkipnllvngssgiavgmatn
ipphnltevingclayiddedisieglmehipgpdfptaaiingrrgieeayrtgrgkvy
iraraevevdaktgretiivheipyqvnkarliekiaelvkekrvegisalrdesdkdgm
rivievkrdavgevvlnnlysqtqlqvsfginmvalhhgqpkimnlkdiiaafvrhrrev
vtrrtifelrkardrahilealavalanidpiielirhaptpaeaktalvanpwqlgnva
amleragddaarpewlepefgvrdglyylteqqaqaildlrlqkltgleheklldeykel
ldqiaellrilgsadrlmevireelelvreqfgdkrrteita

    Sequence, based on observed residues (ATOM records): (download) 
    >2y3pB (B:)
ieeelkssyldyamsvivgralpdvrdglkpvhrrvlyamnvlgndwnkaykksarvvgd
vigkyhphgdsavydtivrmaqpfslrymlvdgqgnfgsidgdsaaamryteirlakiah
elmadleketvdfvdnydgtekipdvmptkipnllvngssgiavgmatnipphnltevin
gclayiddedisieglmehipgpdfptaaiingrrgieeayrtgrgkvyiraraevevda
ktgretiivheipyqvnkarliekiaelvkekrvegisalrdesdkdgmrivievkrdav
gevvlnnlysqtqlqvsfginmvalhhgqpkimnlkdiiaafvrhrrevvtrrtifelrk
ardrahilealavalanidpiielirhaptpaeaktalvanpwqlgnvaamledaarpew
lepefgvrdglyylteqqaqaildlrlqkltgleheklldeykelldqiaellrilgsad
rlmevireelelvreqfgdkrrteit