PDB entry 2y36
View 2y36 on RCSB PDB site
Description: crystal structure analysis of the anti-(4-hydroxy-3-nitrophenyl)- acetyl murine germline antibody bbe6.12h3 fab fragment in complex with a phage display derived dodecapeptide dlwttaiptips
Deposited on
2010-12-18, released
2011-12-28
The last revision was dated
2012-02-15, with a file datestamp of
2012-02-10.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.2305
AEROSPACI score: 0.23
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'H':
Compound: anti-np murine germline monoclonal antibody bbe6.12h3
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: anti-np murine germline monoclonal antibody bbe6.12h3
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Chain 'P':
Compound: dodecapeptide (dlwttaiptips)
Species: synthetic construct, synthetic [TaxId:32630]
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.
- Chain 'H':
Sequence, based on SEQRES records:
>2y36H (H:)
qvqlqqpgaelvkpgasvklsckasgytftsywmhwvkqrpgrglewigridpnsggtay
nekfkskatltvdkpsstaymqlssltsedsavyycarydyyggsyfdywggqttltvss
akttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvvwnsgslssgvhtfpavlqqg
lytlsssvtvpsspwpsetvtcnvahpasstavdkaivpr
Sequence, based on observed residues (ATOM records):
>2y36H (H:)
qvqlqqpgaelvkpgasvklsckasgytftsywmhwvkqrpgrglewigridpnsggtay
nekfkskatltvdkpsstaymqlssltsedsavyycarydyyggsyfdywggqttltvss
akttppsvyplapgssmvtlgclvkgyfpepvtvvwnsgslssgvhtfpavlqqglytls
ssvtvpsspwpsetvtcnvahpasstavdkaivpr
- Chain 'L':
Sequence; same for both SEQRES and ATOM records:
>2y36L (L:)
qavvtqesalttspgetvtltcrsstgavttsnyanwvqekpdhlftgliggtnnrapgv
parfsgsligdkaaltitggqtedeaiyfcalwysnhwvfgggtkltvlgqpksspsvtl
fppsseelatntatlvctitdfypgvvtvdwtvdgtpvtqgmettqpskqsnnkymassy
ltltaaawerhssyscqvtheghtvekslsr
- Chain 'P':
Sequence, based on SEQRES records:
>2y36P (P:)
dlwttaiptips
Sequence, based on observed residues (ATOM records):
>2y36P (P:)
dlwttaiptip