PDB entry 2y35

View 2y35 on RCSB PDB site
Description: crystal structure of xrn1-substrate complex
Deposited on 2010-12-18, released 2011-03-16
The last revision was dated 2011-08-03, with a file datestamp of 2011-07-29.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: 0.2265
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ld22664p
    Species: Drosophila melanogaster [TaxId:7227]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9VWI1 (0-1139)
      • engineered mutation (206)
  • Chain 'B':
    Compound: dt11 (5'-d(*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp)-3'
    Species: SYTHETIC CONSTRUCT, synthetic [TaxId:32630]
  • Heterogens: MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2y35A (A:)
mgvpkffryiserypclselarehcipefdnlyldmngivhncshpddnnihfhleeeqi
fqeifnyvdklfylikpqrlfflsvdgvaprakmnqqrsrrfrtareaeqqeakaaqrge
lreherfdsncitpgtefmvrlqeglraflktkistdplwqrctvilsgqeapgegehki
mdyirymktqpdydpntrhclygldaaliilglcthelhfvvlreevkfgrnvkrtsvee
trffllhlgllreylelefdalrtdehkldiaqliddwvlmgflvgndfiphlpclhiss
nalpllyrtyigiyptlggninengklnlrrlqifisalteveldhfkehaddlkymnnk
seafdmdvgeitesqnldsdlgalinksmllydddseedcsdenavllkefqnykrnfyr
nkfkrdpndelieelchhyvnalqwvldyyyrgvqswdwyypfhytpfisdlknieqvei
afhmgtpflpfqqllavlpaasakllpvayhdlmllptsplaefyplefesdlngkkhdw
eavvlipfidegrllaamlpceaqlsleerernrhgpmyvykystvaqgpmpaypplral
pvlyctevakwsheiavnlpysvcielpnaartvffpgfptmqhlpfdfelrndrvkvfe
qvsrnqnivlkprkrqledtltavasqylgkvihvgwphlvkaivvrvatrdqrvdsegi
tlndsrrfdseckalqehfinrmgiqfanydvlvyvrtfagnstefrdkgalmvrdswss
svtgypaqgvvadltvwermrknflnvehyfpvgstiflitdpyygsegtvqdprlaytn
griqvsimvrpepkvnaarqlqeerdrdylstfqvcnllrisgrtlgrlsgtvwvvlgpr
rqkmenvtkhniglqlkyprqneeragycfrtnnqwyysslavdlmrnycqrypdvidff
gdsndraefvfeqdvfpnavghrrveelanwvrqqphmkveriscgsktvcretiellia
avddlrslpvkhvklqvkphllikpnvtlpdvyrskrpvrlfdrvvivrtiymvpvgtkg
tvigihpvtdpnpvrlecvhavdtfckvlfdspvpncnnihgiaedrvykvpeialviik

    Sequence, based on observed residues (ATOM records):
    >2y35A (A:)
mgvpkffryiserypclselarehcipefdnlyldmngivhncshpfhleeeqifqeifn
yvdklfylikpqrlfflsvdgvaprakmnqqrsrrfrtareaeqqeakaaqrrfdsncit
pgtefmvrlqeglraflktkistdplwqrctvilsgqeapgegehkimdyirymktqpdy
dpntrhclygldaaliilglcthelhfvvlreevkfgrnvkrtsveetrffllhlgllre
ylelefdalrtdehkldiaqliddwvlmgflvgndfiphlpclhissnalpllyrtyigi
yptlggninengklnlrrlqifisalteveldhfkehadddenavllkefqnykrnfyrn
kfkrdpndelieelchhyvnalqwvldyyyrgvqswdwyypfhytpfisdlknieqveia
fhmgtpflpfqqllavlpaasakllpvayhdlmllptsplaefyplefesdlngkkhdwe
avvlipfidegrllaamlpceaqlsleerernrhgpmyvykystvaqgpmpaypplralp
vlyctevakwsheiavnlpysvcielpnaartvffpgfptmqhlpfdfelrndrvkvfeq
vsrnqnivlkprkrqledtltavasqylgkvihvgwphlvkaivvrvatrdqrvdsegit
lndsrrfdseckalqehfinrmgiqfanydvlvyvrtfagnstefrdkgalmvrdswsss
vtgypaqgvvadltvwerknflnvehyfpvgstiflitdpyygsegtvqdprriqvsimv
rpepkvnaarqlqeerdrdylstfqvcnllrisgrtlgrlsgtvwvvhniglqlkyprqn
eeragycfrtnnqwyysslavdlmrnycqrypdvidffgdsnghrrveelanwvrqqphm
kveriscgsktvcretielliaavddlrkhvklqvkphllikpnvtlpdvyrskrpvrlf
drvvivrtiymvpvgtkgtvigihpvtdpnpvrlecvhavdtfckvlfdspvrvykvpei
alviik

  • Chain 'B':
    No sequence available.