PDB entry 2y2w

View 2y2w on RCSB PDB site
Description: elucidation of the substrate specificity and protein structure of abfb, a family 51 alpha-l-arabinofuranosidase from bifidobacterium longum.
Deposited on 2010-12-16, released 2011-12-28
The last revision was dated 2019-05-08, with a file datestamp of 2019-05-03.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: arabinofuranosidase
    Species: BIFIDOBACTERIUM LONGUM [TaxId:216816]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: arabinofuranosidase
    Species: BIFIDOBACTERIUM LONGUM [TaxId:216816]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: arabinofuranosidase
    Species: BIFIDOBACTERIUM LONGUM [TaxId:216816]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: arabinofuranosidase
    Species: BIFIDOBACTERIUM LONGUM [TaxId:216816]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: arabinofuranosidase
    Species: BIFIDOBACTERIUM LONGUM [TaxId:216816]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: arabinofuranosidase
    Species: BIFIDOBACTERIUM LONGUM [TaxId:216816]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2y2wA (A:)
mtthnsqysaetthpdkqesspaptaagttasnvsttgnattpdasialnadatpvadvp
prlfgsfvehlgrcvyggiyepshptadengfrqdvldlvkelgvtcvrypggnfvsnyn
wedgigprenrpmrrdlawhctetnemgiddfyrwsqkagteimlavnmgtrglkaalde
leyvngapgtawadqrvangieepmdikmwcignemdgpwqvghmspeeyagavdkvaha
mklaesglelvacgssgaymptfgtwektvltkayenldfvschayyfdrghktraaasm
qdflassedmtkfiatvsdaadqareanngtkdialsfdewgvwysdkwneqedqwkaea
aqglhhepwpksphllediytaadavvegslmitllkhcdrvrsasraqlvnviapimae
ehgpawrqttfypfaeaalhargqayapaissptihteaygdvpaidavvtwdeqartgl
llavnrdantphtltidlsglpglpglgtlalgkaqllheddpyrtntaeapeavtpqpl
diamnatgtctatlpaiswisvefhgkghhhhhh

    Sequence, based on observed residues (ATOM records):
    >2y2wA (A:)
ttpdasialnadatpvadvpprlfgsfvehlgrcvyggiyepshptadengfrqdvldlv
kelgvtcvrypggnfvsnynwedgigprenrpmrrdlawhctetnemgiddfyrwsqkag
teimlavnmgtrglkaaldeleyvngapgtawadqrvangieepmdikmwcignemdgpw
qvghmspeeyagavdkvahamklaesglelvacgssgaymptfgtwektvltkayenldf
vschayyfdrghktraaasmqdflassedmtkfiatvsdaadqareanngtkdialsfde
wgvwysdkwneqhhepwpksphllediytaadavvegslmitllkhcdrvrsasraqlvn
viapimaeehgpawrqttfypfaeaalhargqayapaissptihteaygdvpaidavvtw
deqartglllavnrdantphtltidlsglptlalgkaqllheddpyrtntaeapeavtpq
pldiamngtctatlpaiswisvefhg

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2y2wB (B:)
mtthnsqysaetthpdkqesspaptaagttasnvsttgnattpdasialnadatpvadvp
prlfgsfvehlgrcvyggiyepshptadengfrqdvldlvkelgvtcvrypggnfvsnyn
wedgigprenrpmrrdlawhctetnemgiddfyrwsqkagteimlavnmgtrglkaalde
leyvngapgtawadqrvangieepmdikmwcignemdgpwqvghmspeeyagavdkvaha
mklaesglelvacgssgaymptfgtwektvltkayenldfvschayyfdrghktraaasm
qdflassedmtkfiatvsdaadqareanngtkdialsfdewgvwysdkwneqedqwkaea
aqglhhepwpksphllediytaadavvegslmitllkhcdrvrsasraqlvnviapimae
ehgpawrqttfypfaeaalhargqayapaissptihteaygdvpaidavvtwdeqartgl
llavnrdantphtltidlsglpglpglgtlalgkaqllheddpyrtntaeapeavtpqpl
diamnatgtctatlpaiswisvefhgkghhhhhh

    Sequence, based on observed residues (ATOM records):
    >2y2wB (B:)
ttpdasialnadatpvadvpprlfgsfvehlgrcvyggiyepshptadengfrqdvldlv
kelgvtcvrypggnfvsnynwedgigprenrpmrrdlawhctetnemgiddfyrwsqkag
teimlavnmgtrglkaaldeleyvngapgtawadqrvangieepmdikmwcignemdgpw
qvghmspeeyagavdkvahamklaesglelvacgssgaymptfgtwektvltkayenldf
vschayyfdrghktraaasmqdflassedmtkfiatvsdaadqareanngtkdialsfde
wgvwysdkwqglhhepwpksphllediytaadavvegslmitllkhcdrvrsasraqlvn
viapimaeehgpawrqttfypfaeaalhargqayapaissptihteaygdvpaidavvtw
deqartglllavnrdantphtltidlsglplalgkaqllheddpyrtntaeapeavtpqp
ldiamnatctatlpaiswisvefhg

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2y2wC (C:)
mtthnsqysaetthpdkqesspaptaagttasnvsttgnattpdasialnadatpvadvp
prlfgsfvehlgrcvyggiyepshptadengfrqdvldlvkelgvtcvrypggnfvsnyn
wedgigprenrpmrrdlawhctetnemgiddfyrwsqkagteimlavnmgtrglkaalde
leyvngapgtawadqrvangieepmdikmwcignemdgpwqvghmspeeyagavdkvaha
mklaesglelvacgssgaymptfgtwektvltkayenldfvschayyfdrghktraaasm
qdflassedmtkfiatvsdaadqareanngtkdialsfdewgvwysdkwneqedqwkaea
aqglhhepwpksphllediytaadavvegslmitllkhcdrvrsasraqlvnviapimae
ehgpawrqttfypfaeaalhargqayapaissptihteaygdvpaidavvtwdeqartgl
llavnrdantphtltidlsglpglpglgtlalgkaqllheddpyrtntaeapeavtpqpl
diamnatgtctatlpaiswisvefhgkghhhhhh

    Sequence, based on observed residues (ATOM records):
    >2y2wC (C:)
ttpdasialnadatpvadvpprlfgsfvehlgrcvyggiyepshptadengfrqdvldlv
kelgvtcvrypggnfvsnynwedgigprenrpmrrdlawhctetnemgiddfyrwsqkag
teimlavnmgtrglkaaldeleyvngapgtawadqrvangieepmdikmwcignemdgpw
qvghmspeeyagavdkvahamklaesglelvacgssgaymptfgtwektvltkayenldf
vschayyfdrghktraaasmqdflassedmtkfiatvsdaadqareanngtkdialsfde
wgvwysdkwglhhepwpksphllediytaadavvegslmitllkhcdrvrsasraqlvnv
iapimaeehgpawrqttfypfaeaalhargqayapaissptihteaygdvpaidavvtwd
eqartglllavnrdantphtltidlsglplalgkaqllheddpyrtntaeapeavtpqpl
diamntgtctatlpaiswisvefh

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2y2wD (D:)
mtthnsqysaetthpdkqesspaptaagttasnvsttgnattpdasialnadatpvadvp
prlfgsfvehlgrcvyggiyepshptadengfrqdvldlvkelgvtcvrypggnfvsnyn
wedgigprenrpmrrdlawhctetnemgiddfyrwsqkagteimlavnmgtrglkaalde
leyvngapgtawadqrvangieepmdikmwcignemdgpwqvghmspeeyagavdkvaha
mklaesglelvacgssgaymptfgtwektvltkayenldfvschayyfdrghktraaasm
qdflassedmtkfiatvsdaadqareanngtkdialsfdewgvwysdkwneqedqwkaea
aqglhhepwpksphllediytaadavvegslmitllkhcdrvrsasraqlvnviapimae
ehgpawrqttfypfaeaalhargqayapaissptihteaygdvpaidavvtwdeqartgl
llavnrdantphtltidlsglpglpglgtlalgkaqllheddpyrtntaeapeavtpqpl
diamnatgtctatlpaiswisvefhgkghhhhhh

    Sequence, based on observed residues (ATOM records):
    >2y2wD (D:)
ttpdasialnadatpvadvpprlfgsfvehlgrcvyggiyepshptadengfrqdvldlv
kelgvtcvrypggnfvsnynwedgigprenrpmrrdlawhctetnemgiddfyrwsqkag
teimlavnmgtrglkaaldeleyvngapgtawadqrvangieepmdikmwcignemdgpw
qvghmspeeyagavdkvahamklaesglelvacgssgaymptfgtwektvltkayenldf
vschayyfdrghktraaasmqdflassedmtkfiatvsdaadqareanngtkdialsfde
wgvwysdkwneqedqwkaeaaqglhhepwpksphllediytaadavvegslmitllkhcd
rvrsasraqlvnviapimaeehgpawrqttfypfaeaalhargqayapaissptihteay
gdvpaidavvtwdeqartglllavnrdantphtltidlsglpalgkaqllheddpyrtnt
aeapeavtpqplditctatlpaiswisvefh

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2y2wE (E:)
mtthnsqysaetthpdkqesspaptaagttasnvsttgnattpdasialnadatpvadvp
prlfgsfvehlgrcvyggiyepshptadengfrqdvldlvkelgvtcvrypggnfvsnyn
wedgigprenrpmrrdlawhctetnemgiddfyrwsqkagteimlavnmgtrglkaalde
leyvngapgtawadqrvangieepmdikmwcignemdgpwqvghmspeeyagavdkvaha
mklaesglelvacgssgaymptfgtwektvltkayenldfvschayyfdrghktraaasm
qdflassedmtkfiatvsdaadqareanngtkdialsfdewgvwysdkwneqedqwkaea
aqglhhepwpksphllediytaadavvegslmitllkhcdrvrsasraqlvnviapimae
ehgpawrqttfypfaeaalhargqayapaissptihteaygdvpaidavvtwdeqartgl
llavnrdantphtltidlsglpglpglgtlalgkaqllheddpyrtntaeapeavtpqpl
diamnatgtctatlpaiswisvefhgkghhhhhh

    Sequence, based on observed residues (ATOM records):
    >2y2wE (E:)
nattpdasialnadatpvadvpprlfgsfvehlgrcvyggiyepshptadengfrqdvld
lvkelgvtcvrypggnfvsnynwedgigprenrpmrrdlawhctetnemgiddfyrwsqk
agteimlavnmgtrglkaaldeleyvngapgtawadqrvangieepmdikmwcignemdg
pwqvghmspeeyagavdkvahamklaesglelvacgssgaymptfgtwektvltkayenl
dfvschayyfdrghktraaasmqdflassedmtkfiatvsdaadqareanngtkdialsf
dewgvwysdkwneqedqwkaeaaqglhhepwpksphllediytaadavvegslmitllkh
cdrvrsasraqlvnviapimaeehgpawrqttfypfaeaalhargqayapaissptihte
aygdvpaidavvtwdeqartglllavnrdantphtltidlsglptlalgkaqllheddpy
rtntaeapeavtpqpldiamntctatlpaiswisvefhg

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2y2wF (F:)
mtthnsqysaetthpdkqesspaptaagttasnvsttgnattpdasialnadatpvadvp
prlfgsfvehlgrcvyggiyepshptadengfrqdvldlvkelgvtcvrypggnfvsnyn
wedgigprenrpmrrdlawhctetnemgiddfyrwsqkagteimlavnmgtrglkaalde
leyvngapgtawadqrvangieepmdikmwcignemdgpwqvghmspeeyagavdkvaha
mklaesglelvacgssgaymptfgtwektvltkayenldfvschayyfdrghktraaasm
qdflassedmtkfiatvsdaadqareanngtkdialsfdewgvwysdkwneqedqwkaea
aqglhhepwpksphllediytaadavvegslmitllkhcdrvrsasraqlvnviapimae
ehgpawrqttfypfaeaalhargqayapaissptihteaygdvpaidavvtwdeqartgl
llavnrdantphtltidlsglpglpglgtlalgkaqllheddpyrtntaeapeavtpqpl
diamnatgtctatlpaiswisvefhgkghhhhhh

    Sequence, based on observed residues (ATOM records):
    >2y2wF (F:)
tpdasialnadatpvadvpprlfgsfvehlgrcvyggiyepshptadengfrqdvldlvk
elgvtcvrypggnfvsnynwedgigprenrpmrrdlawhctetnemgiddfyrwsqkagt
eimlavnmgtrglkaaldeleyvngapgtawadqrvangieepmdikmwcignemdgpwq
vghmspeeyagavdkvahamklaesglelvacgssgaymptfgtwektvltkayenldfv
schayyfdrghktraaasmqdflassedmtkfiatvsdaadqareanngtkdialsfdew
gvwysdkwneqedqwkaeaaqglhhepwpksphllediytaadavvegslmitllkhcdr
vrsasraqlvnviapimaeehgpawrqttfypfaeaalhargqayapaissptihteayg
dvpaidavvtwdeqartglllavnrdantphtltidlsglpgtlalgkaqllheddpyrt
ntaeapeavtpqpldiamntgtctatlpaiswisvefhg