PDB entry 2y2b

View 2y2b on RCSB PDB site
Description: crystal structure of ampd in complex with reaction products
Class: hydrolase
Keywords: hydrolase, peptidoglycan amidase, amidase_2 family, activation mechanism
Deposited on 2010-12-14, released 2011-07-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-09-14, with a file datestamp of 2011-09-09.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.1734
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 1,6-anhydro-n-acetylmuramyl-l-alanine amidase ampd
    Species: Citrobacter freundii [TaxId:546]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2y2ba_
  • Chain 'B':
    Compound: 1,6-anhydro-n-acetylmuramyl-l-alanine amidase ampd
    Species: Citrobacter freundii [TaxId:546]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2y2bb_
  • Chain 'C':
    Compound: 1,6-anhydro-n-acetylmuramyl-l-alanine amidase ampd
    Species: Citrobacter freundii [TaxId:546]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2y2bc_
  • Heterogens: AH0, MHI, ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2y2bA (A:)
mlldegwlaearrvpsphydcrpddenpsllvvhnislppgefggpwidalftgtidpna
hpyfagiahlrvsahclirrdgeivqyvpfdkrawhagvssyqgrercndfsigielegt
dtlaytdaqyqqlaavtnalitrypaiannmtghcniaperktdpgpsfdwarfralvtp
sshkemt

    Sequence, based on observed residues (ATOM records): (download) 
    >2y2bA (A:)
mlldegwlaearrvpsphydcrpddenpsllvvhnislppgefggpwidalftgtidpna
hpyfagiahlrvsahclirrdgeivqyvpfdkrawhagvssyqgrercndfsigielegt
dtlaytdaqyqqlaavtnalitrypaiannmtghcniaperktdpgpsfdwarfralvt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2y2bB (B:)
mlldegwlaearrvpsphydcrpddenpsllvvhnislppgefggpwidalftgtidpna
hpyfagiahlrvsahclirrdgeivqyvpfdkrawhagvssyqgrercndfsigielegt
dtlaytdaqyqqlaavtnalitrypaiannmtghcniaperktdpgpsfdwarfralvtp
sshkemt

    Sequence, based on observed residues (ATOM records): (download) 
    >2y2bB (B:)
mlldegwlaearrvpsphydcrpddenpsllvvhnislppgefggpwidalftgtidpna
hpyfagiahlrvsahclirrdgeivqyvpfdkrawhagvssyqgrercndfsigielegt
dtlaytdaqyqqlaavtnalitrypaiannmtghcniaperktdpgpsfdwarfralvtp
s

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2y2bC (C:)
mlldegwlaearrvpsphydcrpddenpsllvvhnislppgefggpwidalftgtidpna
hpyfagiahlrvsahclirrdgeivqyvpfdkrawhagvssyqgrercndfsigielegt
dtlaytdaqyqqlaavtnalitrypaiannmtghcniaperktdpgpsfdwarfralvtp
sshkemt

    Sequence, based on observed residues (ATOM records): (download) 
    >2y2bC (C:)
mlldegwlaearrvpsphydcrpddenpsllvvhnislppgefggpwidalftgtidpna
hpyfagiahlrvsahclirrdgeivqyvpfdkrawhagvssyqgrercndfsigielegt
dtlaytdaqyqqlaavtnalitrypaiannmtghcniaperktdpgpsfdwarfralvtp
s