PDB entry 2y28
View 2y28 on RCSB PDB site
Description: crystal structure of Se-Met AmpD derivative
Class: hydrolase
Keywords: hydrolase, peptidoglycan amidase, amidase_2 family, activation mechanism
Deposited on
2010-12-14, released
2011-07-20
The last revision prior to the SCOPe 2.08 freeze date was dated
2011-12-28, with a file datestamp of
2011-12-23.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.1835
AEROSPACI score: 0.51
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: 1,6-anhydro-n-acetylmuramyl-l-alanine amidase ampd
Species: Citrobacter freundii [TaxId:546]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2y28a_ - Chain 'B':
Compound: 1,6-anhydro-n-acetylmuramyl-l-alanine amidase ampd
Species: Citrobacter freundii [TaxId:546]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2y28b_ - Chain 'C':
Compound: 1,6-anhydro-n-acetylmuramyl-l-alanine amidase ampd
Species: Citrobacter freundii [TaxId:546]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2y28c_ - Heterogens: ZN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2y28A (A:)
mlldegwlaearrvpsphydcrpddenpsllvvhnislppgefggpwidalftgtidpna
hpyfagiahlrvsahclirrdgeivqyvpfdkrawhagvssyqgrercndfsigielegt
dtlaytdaqyqqlaavtnalitrypaiannmtghcniaperktdpgpsfdwarfralvtp
sshkemt
Sequence, based on observed residues (ATOM records): (download)
>2y28A (A:)
mlldegwlaearrvpsphydcrpddenpsllvvhnislppgefggpwidalftgtidpna
hpyfagiahlrvsahclirrdgeivqyvpfdkrawhagvssyqgrercndfsigielegt
dtlaytdaqyqqlaavtnalitrypaiannmtghcniaperktdpgpsfdwarfralvtp
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2y28B (B:)
mlldegwlaearrvpsphydcrpddenpsllvvhnislppgefggpwidalftgtidpna
hpyfagiahlrvsahclirrdgeivqyvpfdkrawhagvssyqgrercndfsigielegt
dtlaytdaqyqqlaavtnalitrypaiannmtghcniaperktdpgpsfdwarfralvtp
sshkemt
Sequence, based on observed residues (ATOM records): (download)
>2y28B (B:)
mlldegwlaearrvpsphydcrpddenpsllvvhnislppgefggpwidalftgtidpna
hpyfagiahlrvsahclirrdgeivqyvpfdkrawhagvssyqgrercndfsigielegt
dtlaytdaqyqqlaavtnalitrypaiannmtghcniaperktdpgpsfdwarfralv
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2y28C (C:)
mlldegwlaearrvpsphydcrpddenpsllvvhnislppgefggpwidalftgtidpna
hpyfagiahlrvsahclirrdgeivqyvpfdkrawhagvssyqgrercndfsigielegt
dtlaytdaqyqqlaavtnalitrypaiannmtghcniaperktdpgpsfdwarfralvtp
sshkemt
Sequence, based on observed residues (ATOM records): (download)
>2y28C (C:)
mlldegwlaearrvpsphydcrpddenpsllvvhnislppgefggpwidalftgtidpna
hpyfagiahlrvsahclirrdgeivqyvpfdkrawhagvssyqgrercndfsigielegt
dtlaytdaqyqqlaavtnalitrypaiannmtghcniaperktdpgpsfdwarfralvt