PDB entry 2y1i

View 2y1i on RCSB PDB site
Description: crystal structure of a s-diastereomer analogue of the spore photoproduct in complex with fragment dna polymerase i from bacillus stearothermophilus
Deposited on 2010-12-08, released 2011-07-27
The last revision was dated 2011-11-02, with a file datestamp of 2011-10-28.
Experiment type: XRAY
Resolution: 2.78 Å
R-factor: 0.22807
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase I
    Species: GEOBACILLUS STEAROTHERMOPHILUS [TaxId:1422]
    Database cross-references and differences (RAF-indexed):
    • Uniprot D7D223 (0-579)
      • conflict (53)
      • conflict (208)
      • conflict (413)
  • Chain 'B':
    Compound: 5'-d(*gp*ap*cp*cp*ap*ap*cp*cp*cp*tp)-3'
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'C':
    Compound: 5'-d(*ap*gp*gp*gp*pbtp*thm*gp*gp*tp*cp)-3'
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >2y1iA (A:)
akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpesaladpq
fvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakm
kqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwalerpfldelrrneqdrllve
leqplssilaemefagvkvdtkrleqmgkelaeqlrtveqriyelagqefninspkqlgv
ilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyiegllkvvr
pdtkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwlifaadysq
ielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnkgivygi
sdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpdi
tsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqarlllqvhdelilea
pkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.