PDB entry 2y0x

View 2y0x on RCSB PDB site
Description: The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
Deposited on 2010-12-07, released 2011-03-09
The last revision was dated 2014-12-10, with a file datestamp of 2014-12-05.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.243
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '0':
    Compound: 50S ribosomal protein L27
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain '1':
    Compound: 50S ribosomal protein L28
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain '2':
    Compound: 50S ribosomal protein L29
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain '3':
    Compound: 50S ribosomal protein L30
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain '4':
    Compound: 50S ribosomal protein L31
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain '5':
    Compound: 50S ribosomal protein L32
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain '6':
    Compound: 50S ribosomal protein L33
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain '7':
    Compound: 50S ribosomal protein L34
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain '8':
    Compound: 50S ribosomal protein L35
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain '9':
    Compound: 50S ribosomal protein L36
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'A':
    Compound: 23S ribosomal RNA
    Species: THERMUS THERMOPHILUS [TaxId:300852]
  • Chain 'B':
    Compound: 5S ribosomal RNA
    Species: THERMUS THERMOPHILUS [TaxId:300852]
  • Chain 'C':
    Compound: 50s ribosomal protein l1
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 50S ribosomal protein L2
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: 50S ribosomal protein L3
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: 50S ribosomal protein L4
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: 50S ribosomal protein L5
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: 50S ribosomal protein L6
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: 50s ribosomal protein l10
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
    • PDB 2Y0X
  • Chain 'K':
    Compound: 50S ribosomal protein L11
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
    • PDB 2Y0X (0-End)
  • Chain 'N':
    Compound: 50S ribosomal protein L13
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: 50S ribosomal protein L14
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: 50S ribosomal protein L15
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: 50S ribosomal protein L16
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: 50S ribosomal protein L17
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: 50S ribosomal protein L18
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: 50S ribosomal protein L19
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: 50S ribosomal protein L20
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'V':
    Compound: 50S ribosomal protein L21
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'W':
    Compound: 50S ribosomal protein L22
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: 50S ribosomal protein L23
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Y':
    Compound: 50S ribosomal protein L24
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Z':
    Compound: 50S ribosomal protein L25
    Species: THERMUS THERMOPHILUS [TaxId:300852]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain '0':
    Sequence, based on SEQRES records:
    >2y0x0 (0:)
mahkkglgstrngrdsqakrlgvkryegqvvragnilvrqrgtrfkpgknvgmgrdftlf
alvdgvvefqdrgrlgryvhvrpla

    Sequence, based on observed residues (ATOM records):
    >2y0x0 (0:)
ahkkglgstrngrdsqakrlgvkryegqvvragnilvrqrgtrfkpgknvgmgrdftlfa
lvdgvvefqdrgrlgryvhvrpla

  • Chain '1':
    Sequence, based on SEQRES records:
    >2y0x1 (1:)
mskvceisgkrpivansiqrrgkakreggvgkkttgiskrrqypnlqkvrvrvagqeitf
rvaashipkvyelverakglkleglspkeikkellkll

    Sequence, based on observed residues (ATOM records):
    >2y0x1 (1:)
kvceisgkrpivansiqrrgkakreggvgkkttgiskrrqypnlqkvrvrvagqeitfrv
aashipkvyelverakglkleglspkeikkell

  • Chain '2':
    Sequence, based on SEQRES records:
    >2y0x2 (2:)
mklsevrkqleearklspveleklvrekkrelmelrfqasigqlsqnhkirdlkrqiarl
ltvlnekrrqna

    Sequence, based on observed residues (ATOM records):
    >2y0x2 (2:)
klsevrkqleearklspveleklvrekkrelmelrfqasigqlsqnhkirdlkrqiarll
tvlnekrrqna

  • Chain '3':
    Sequence, based on SEQRES records:
    >2y0x3 (3:)
mprlkvklvkspigypkdqkaalkalglrrlqqervledtpairgnvekvahlvrvevve

    Sequence, based on observed residues (ATOM records):
    >2y0x3 (3:)
mprlkvklvkspigypkdqkaalkalglrrlqqervledtpairgnvekvahlvrvevv

  • Chain '4':
    Sequence, based on SEQRES records:
    >2y0x4 (4:)
mkegihpklvpariicgcgnvietystkpeiyvevcskchpfytgqqrfvdtegrverfq
rrygdsyrkgr

    Sequence, based on observed residues (ATOM records):
    >2y0x4 (4:)
gihpklvpariicgcgnvietystkpeiyvevcskchpfytgqq

  • Chain '5':
    Sequence, based on SEQRES records:
    >2y0x5 (5:)
makhpvpkkktskarrdarrshhaltpptlvpcpeckamkpphtvcpecgyyagrkvlev

    Sequence, based on observed residues (ATOM records):
    >2y0x5 (5:)
akhpvpkkktskarrdarrshhaltpptlvpcpeckamkpphtvcpecgyyagrkvlev

  • Chain '6':
    Sequence, based on SEQRES records:
    >2y0x6 (6:)
masevriklllecteckrrnyateknkrntpnklelrkycpwcrkhtvhrevki

    Sequence, based on observed residues (ATOM records):
    >2y0x6 (6:)
vriklllecteckrrnyateknkrntpnklelrkycpwcrkhtvhrevki

  • Chain '7':
    Sequence, based on SEQRES records:
    >2y0x7 (7:)
mkrtwqpnrrkrakthgfrarmrtpggrkvlkrrrqkgrwrltpavrkr

    Sequence, based on observed residues (ATOM records):
    >2y0x7 (7:)
mkrtwqpnrrkrakthgfrarmrtpggrkvlkrrrqkgrwrltpavrk

  • Chain '8':
    Sequence, based on SEQRES records:
    >2y0x8 (8:)
mpkmkthkgakkrvkitasgkvvamktgkrhlnwqksgkeirqkgrkfvlakpeaerikl
llpye

    Sequence, based on observed residues (ATOM records):
    >2y0x8 (8:)
pkmkthkgakkrvkitasgkvvamktgkrhlnwqksgkeirqkgrkfvlakpeaerikll
lpy

  • Chain '9':
    Sequence; same for both SEQRES and ATOM records:
    >2y0x9 (9:)
mkvrasvkricdkckvirrhgrvyvicenpkhkqrqg

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2y0xC (C:)
mpkhgkryrallekvdpnkvytideaarlvkelatakfdetvevhaklgidprrsdqnvr
gtvslphglgkqvrvlaiakgekikeaeeagadyvggeeiiqkildgwmdfdavvatpdv
mgavgsklgrilgprgllpnpkagtvgfnigeiireikagriefrndktgaihapvgkas
fppekladnirafiraleahkpegakgtflrsvyvtttmgpsvrinphs

    Sequence, based on observed residues (ATOM records):
    >2y0xC (C:)
pkhgkryrallekvdpnkvytideaarlvkelatakfdetvevhaklgidprrsdqnvrg
tvslphglgkqvrvlaiakgekikeaeeagadyvggeeiiqkildgwmdfdavvatpdvm
gavgsklgrilgprgllpnpkagtvgfnigeiireikagriefrndktgaihapvgkasf
ppekladnirafiraleahkpegakgtflrsvyvtttmgpsvrinphs

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2y0xD (D:)
mavkkfkpytpsrrfmtvadfseitktepekslvkplkktggrnnqgritvrfrggghkr
lyriidfkrwdkvgipakvaaieydpnrsariallhyvdgekryiiapdglqvgqqvvag
pdapiqvgnalplrfipvgtvvhavelepkkgaklaraagtsaqiqgregdyvilrlpsg
elrkvhgecyatvgavgnadhknivlgkagrsrwlgrrphvrgaamnpvdhphgggegra
prgrppaspwgwqtkglktrkrrkpssrfiiarrkk

    Sequence, based on observed residues (ATOM records):
    >2y0xD (D:)
avkkfkpytpsrrfmtvadfseitktepekslvkplkktggrnnqgritvrfrggghkrl
yriidfkrwdkvgipakvaaieydpnrsariallhyvdgekryiiapdglqvgqqvvagp
dapiqvgnalplrfipvgtvvhavelepkkgaklaraagtsaqiqgregdyvilrlpsge
lrkvhgecyatvgavgnadhknivlgkagrsrwlgrrphvrgaamnpvdhphgggegrap
rgrppaspwgwqtkglktrkrrkpssrfiiarrkk

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2y0xE (E:)
mkgilgvkvgmtrifrddravpvtvilagpcpvvqrrtpekdgytavqlgflpqnpkrvn
rplkghfakagvepvrilreirdfnpegdtvtveifkpgervdvtgtskgrgfagvmkrw
nfaggpdshgahkihrhpgsignrktpgrvykgkkmaghygaervtvmnlevvdvipeen
lllvkgavpgpngglvivretkkaak

    Sequence, based on observed residues (ATOM records):
    >2y0xE (E:)
mkgilgvkvgmtrifrddravpvtvilagpcpvvqrrtpekdgytavqlgflpqnpkrvn
rplkghfakagvepvrilreirdfnpegdtvtveifkpgervdvtgtskgrgfagvmkrw
nfaggpdshgahkihrhpgsignrktpgrvykgkkmaghygaervtvmnlevvdvipeen
lllvkgavpgpngglvivretkka

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2y0xF (F:)
mkevavyqipvlspsgrrelaadlpaeinphllwevvrwqlakrrrgtastktrgevays
grkiwpqkhtgrarhgdigapifvgggvvfgpkprdysytlpkkvrkkglamavadrare
gklllveafagvngktkeflawakeagldgsesvllvtgnelvrraarnlpwvvtlapeg
lnvydivrterlvmdldawevfqnriggea

    Sequence, based on observed residues (ATOM records):
    >2y0xF (F:)
mkevavyqipvlspsgrrelaadlpaeinphllwevvrwqlakrrrgtastktrgevays
grkiwpqkhtgrarhgdigapifvgggvvfgpkprdysytlpkkvrkkglamavadrare
gklllveafagvngktkeflawakeagldgsesvllvtgnelvrraarnlpwvvtlapeg
lnvydivrterlvmdldawevfqnrig

  • Chain 'G':
    Sequence, based on SEQRES records:
    >2y0xG (G:)
mpldvalkrkyyeevrpelirrfgyqnvwevprlekvvinqglgeakedarilekaaqel
alitgqkpavtrakksisnfklrkgmpiglrvtlrrdrmwiflekllnvalprirdfrgl
npnsfdgrgnynlglreqlifpeitydmvdalrgmdiavvttaetdeearallellgfpf
rk

    Sequence, based on observed residues (ATOM records):
    >2y0xG (G:)
pldvalkrkyyeevrpelirrfgyqnvwevprlekvvinqglgeakedarilekaaqela
litgqkpavtrakksisnfklrkgmpiglrvtlrrdrmwiflekllnvalprirdfrgln
pnsfdgrgnynlglreqlifpeitydmvdalrgmdiavvttaetdeearallellgfpfr
k

  • Chain 'H':
    Sequence, based on SEQRES records:
    >2y0xH (H:)
msrigrlpipvpkgvsvevapgrvkvkgpkgelevpvspemrvvveegvvrverpsderr
hkslhgltrtlianavkgvsegyskellikgigyrarlvgraleltvgfshpvvveppeg
itfevpeptrvrvsgidkqkvgqvaanirairkpsayhekgiyyagepvrlkpgkagakk

    Sequence, based on observed residues (ATOM records):
    >2y0xH (H:)
pkgvsvevapgrvkvkgpkgelevpvspemrvvveegvvrverpsderrhkslhgltrtl
ianavkgvsegyskellikgigyrarlvgraleltvgfshpvvveppegitfevpeptrv
rvsgidkqkvgqvaanirairkpsayhekgiyyagepvr

  • Chain 'J':
    Sequence, based on SEQRES records:
    >2y0xJ (J:)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
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    Sequence, based on observed residues (ATOM records):
    >2y0xJ (J:)
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  • Chain 'K':
    Sequence, based on SEQRES records:
    >2y0xK (K:)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
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    Sequence, based on observed residues (ATOM records):
    >2y0xK (K:)
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  • Chain 'N':
    Sequence, based on SEQRES records:
    >2y0xN (N:)
mktyvpkqveprwvlidaegktlgrlatkiatllrgkhrpdwtpnvamgdfvvvvnadki
rvtgkkleqkiytrysgypgglkkiplekmlathpervlehavkgmlpkgplgrrlfkrl
kvyagpdhphqaqrpeklev

    Sequence, based on observed residues (ATOM records):
    >2y0xN (N:)
mktyvpkqveprwvlidaegktlgrlatkiatllrgkhrpdwtpnvamgdfvvvvnadki
rvtgkkleqkiytrysgypgglkkiplekmlathpervlehavkgmlpkgplgrrlfkrl
kvyagpdhphqaqrpekl

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records:
    >2y0xO (O:)
miqpqtylevadntgarkimcirvlkgsnakyatvgdvivasvkeaiprgavkegdvvka
vvvrtkkeikrpdgsairfddnaaviinnqleprgtrvfgpvarelrekgfmkivslape
vl

  • Chain 'P':
    Sequence, based on SEQRES records:
    >2y0xP (P:)
mklsdlrpnpgankrrkrvgrgpgsghgktatrghkgqksrsgglkdprrfeggrsttlm
rlpkrgmqgqvpgeikrpryqgvnlkdlarfegevtpellvragllkkgyrlkilgegea
kplkvvahafsksaleklkaaggepvllea

    Sequence, based on observed residues (ATOM records):
    >2y0xP (P:)
dlrpnpgankrrkrvgrgpgsghgktatrghkgqksrsgglkdprrfeggrsttlmrlpk
rgmqgqvpgeikrpryqgvnlkdlarfegevtpellvragllkkgyrlkilgegeakplk
vvahafsksaleklkaaggepvllea

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records:
    >2y0xQ (Q:)
mlmprrmkyrkqqrgrlkgatkggdyvafgdyglvalepawitaqqieaarvamvrhfrr
ggkifirifpdkpytkkplevrmgkgkgnvegyvavvkpgrvmfevagvteeqamealri
aghklpiktkivrrdaydeaq

  • Chain 'R':
    Sequence, based on SEQRES records:
    >2y0xR (R:)
mrhlksgrklnrhsshrlalyrnqaksllthgritttvpkakelrgfvdhlihlakrgdl
harrlvlrdlqdvklvrklfdeiapryrdrqggytrvlklaerrrgdgaplalvelve

    Sequence, based on observed residues (ATOM records):
    >2y0xR (R:)
rhlksgrklnrhsshrlalyrnqaksllthgritttvpkakelrgfvdhlihlakrgdlh
arrlvlrdlqdvklvrklfdeiapryrdrqggytrvlklaerrrgdgaplalvelve

  • Chain 'S':
    Sequence, based on SEQRES records:
    >2y0xS (S:)
marltayerrkfrvrnrikrtgrlrlsvfrslkhiyaqiiddekgvtlvsasslalklkg
nktevarqvgralaekalalgikqvafdrgpykyhgrvkalaegaregglef

    Sequence, based on observed residues (ATOM records):
    >2y0xS (S:)
kfrvrnrikrtgrlrlsvfrslkhiyaqiiddekgvtlvsasslalklkgnktevarqvg
ralaekalalgikqvafdrgpykyhgrvkalaegareg

  • Chain 'T':
    Sequence, based on SEQRES records:
    >2y0xT (T:)
mnrgaliklvesryvrtdlpefrpgdtvrvsykvkegnrtriqdfegivirirrngfntt
ftvrkvsygvgverifplhspliqkidivqrgrarraklyfirnlsdreirrklradrkr
idqdraaeraakeeaqkaqepkasqe

    Sequence, based on observed residues (ATOM records):
    >2y0xT (T:)
mnrgaliklvesryvrtdlpefrpgdtvrvsykvkegnrtriqdfegivirirrngfntt
ftvrkvsygvgverifplhspliqkidivqrgrarraklyfirnlsdreirrklradrkr
idqdraaeraakeeaqk

  • Chain 'U':
    Sequence, based on SEQRES records:
    >2y0xU (U:)
mpraktgvvrrrkhkkilklakgywglrsksfrkaretlfaagnyayahrkrrkrdfrrl
wivrinaacrqhglnystfihglkkagievdrknladlavrepqvfaelverakaaqg

    Sequence, based on observed residues (ATOM records):
    >2y0xU (U:)
praktgvvrrrkhkkilklakgywglrsksfrkaretlfaagnyayahrkrrkrdfrrlw
ivrinaacrqhglnystfihglkkagievdrknladlavrepqvfaelverakaaqg

  • Chain 'V':
    Sequence; same for both SEQRES and ATOM records:
    >2y0xV (V:)
mfaivktggkqyrvepglklrvekldaepgatvelpvlllggektvvgtpvvegasvvae
vlghgrgkkilvskfkakvqyrrkkghrqpytellikeirg

  • Chain 'W':
    Sequence; same for both SEQRES and ATOM records:
    >2y0xW (W:)
meakaiaryvrisprkvrlvvdlirgksleearnilrytnkrgayfvakvlesaaanavn
nhdmledrlyvkaayvdegpalkrvlprargradiikkrtshitvilgekhgk

  • Chain 'X':
    Sequence, based on SEQRES records:
    >2y0xX (X:)
mktaydvilapvlsekayagfaegkytfwvhpkatkteiknavetafkvkvvkvntlhvr
gkkkrlgrylgkrpdrkkaivqvapgqkiealegli

    Sequence, based on observed residues (ATOM records):
    >2y0xX (X:)
taydvilapvlsekayagfaegkytfwvhpkatkteiknavetafkvkvvkvntlhvrgk
kkrlgrylgkrpdrkkaivqvapgqkiealeg

  • Chain 'Y':
    Sequence, based on SEQRES records:
    >2y0xY (Y:)
mrvkmhvkkgdtvlvasgkykgrvgkvkevlpkkyavivegvnivkkavrvspkypqggf
iekeaplhaskvrpicpacgkptrvrkkflengkkirvcakcggaldtee

    Sequence, based on observed residues (ATOM records):
    >2y0xY (Y:)
rvkmhvkkgdtvlvasgkykgrvgkvkevlpkkyavivegvnivkkavrvspkypqggfi
ekeaplhaskvrpicpacgkptrvrkkflengkkirvcak

  • Chain 'Z':
    Sequence, based on SEQRES records:
    >2y0xZ (Z:)
meyrlkayyregekpsalrragklpgvmynrhlnrkvyvdlvefdkvfrqasihhvivle
lpdgqslptlvrqvnldkrrrrpehvdffvlsdepvemyvplrfvgtpagvraggvlqei
hrdilvkvsprnipefievdvsgleigdslhasdlklppgvelavspeetiaavvppedv
eklaeeaaaevaepevikkgkeeeee

    Sequence, based on observed residues (ATOM records):
    >2y0xZ (Z:)
yrlkayyregekpsalrragklpgvmynrhlnrkvyvdlvefdkvfrqasihhvivlelp
dgqslptlvrqvnldkrrrrpehvdffvlsdepvemyvplrfvgtpagvraggvlqeihr
dilvkvsprnipefievdvsgleigdslhasdlklppgvelavspeetiaavvppe