SCOPe 2.08: Structural Classification of Proteins

PDB entry 2y0p

View 2y0p on RCSB PDB site
Description: crystal structure of the suca domain of mycobacterium smegmatis alpha-ketoglutarate decarboxylase in complex with the enamine-thdp intermediate and acetyl-coa
Deposited on 2010-12-07, released 2011-06-15
The last revision was dated 2011-10-12, with a file datestamp of 2011-10-07.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.198
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: 2-oxoglutarate decarboxylase
Species: MYCOBACTERIUM SMEGMATIS [TaxId:246196]
Database cross-references and differences (RAF-indexed):
- Uniprot A0R2B1 (1-867)
Chain 'B':
Compound: 2-oxoglutarate decarboxylase
Species: MYCOBACTERIUM SMEGMATIS [TaxId:246196]
Database cross-references and differences (RAF-indexed):
- Uniprot A0R2B1 (Start-867)
Chain 'C':
Compound: 2-oxoglutarate decarboxylase
Species: MYCOBACTERIUM SMEGMATIS [TaxId:246196]
Database cross-references and differences (RAF-indexed):
- Uniprot A0R2B1 (Start-867)
Chain 'D':
Compound: 2-oxoglutarate decarboxylase
Species: MYCOBACTERIUM SMEGMATIS [TaxId:246196]
Database cross-references and differences (RAF-indexed):
- Uniprot A0R2B1 (Start-867)
Heterogens: TD7, MG, ACO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

Chain 'A':
Sequence, based on SEQRES records:

>2y0pA (A:)
gdsiedknarvieliaayrnrghlmadidplrldntrfrshpdldvnshgltlwdldref
kvdgfagvqrkklrdilsvlrdaycrhvgveythilepeqqrwiqervetkhdkptvaeq
kyilsklnaaeafetflqtkyvgqkrfslegaetvipmmdavidqcaehgldevviamph
rgrlnvlanivgkpysqifsefegnlnpsqahgsgdvkyhlgatgtyiqmfgdndievsl
tanpshleavdpvleglvrakqdlldtgeegsdnrfsvvplmlhgdaafagqgvvaetln
lallrgyrtggtihivvnnqigfttaptdsrsseyctdvakmigapifhvngddpeacaw
varlavdfrqafkkdvvidmlcyrrrghnegddpsmtqpymydvidtkrgsrkayteali
grgdismkeaedalrdyqgqlervfnevrelekheiepsesveadqqipsklatavdkam
lqrigdahlalpegftvhprvrpvlekrremayegridwafaellalgsliaegklvrls
gqdtqrgtftqrhavivdrktgeeftplqllatnpdgtptggkflvynsalsefaavgfe
ygysvgnpdamvlweaqfgdfvngaqsiidefissgeakwgqlsdvvlllphghegqgpd
htsgrierflqlwaegsmtiampstpanyfhllrrhgkdgiqrplivftpksmlrnkaav
sdirdfteskfrsvleepmytdgegdrnkvtrllltsgkiyyelaarkakenredvaivr
ieqlaplprrrlaetldrypnvkekfwvqeepanqgawpsfgltlpeilpdhftglkris
rramsapssgsskvhaveqqeildtafg

Sequence, based on observed residues (ATOM records):

>2y0pA (A:)
dsiedknarvieliaayrnrghlmadidplrldltlwdldrefkvdvqrkklrdilsvlr
daycrhvgveythilepeqqrwiqervetkhdkptvaeqkyilsklnaaeafetflqtky
vgqkrfslegaetvipmmdavidqcaehgldevviamphrgrlnvlanivgkpysqifse
fegnlnpsqahgsgdvkyhlgatgtyiqmfgdndievsltanpshleavdpvleglvrak
qdlldtgeegsdnrfsvvplmlhgdaafagqgvvaetlnlallrgyrtggtihivvnnqi
gfttaptdsrsseyctdvakmigapifhvngddpeacawvarlavdfrqafkkdvvidml
cyrrrghnegddpsmtqpymydvidtkrgsrkaytealigrgdismkeaedalrdyqgql
ervfnevrelekheiepsesveadqqipsklatavdkamlqrigdahlalpegftvhprv
rpvlekrremayegridwafaellalgsliaegklvrlsgqdtqrgtftqrhavivdrkt
geeftplqllatnpdgtptggkflvynsalsefaavgfeygysvgnpdamvlweaqfgdf
vngaqsiidefissgeakwgqlsdvvlllphghegqgpdhtsgrierflqlwaegsmtia
mpstpanyfhllrrhgkdgiqrplivftpksmlrnkaavsdirdfteskfrsvleepmyt
dgegdrnkvtrllltsgkiyyelaarkakenredvaivrieqlaplprrrlaetldrypn
vkekfwvqeepanqgawpsfgltlpeilpdhftglkrisrramsapssgsskvhaveqqe
ildtafg

Chain 'B':
Sequence, based on SEQRES records:

>2y0pB (B:)
gdsiedknarvieliaayrnrghlmadidplrldntrfrshpdldvnshgltlwdldref
kvdgfagvqrkklrdilsvlrdaycrhvgveythilepeqqrwiqervetkhdkptvaeq
kyilsklnaaeafetflqtkyvgqkrfslegaetvipmmdavidqcaehgldevviamph
rgrlnvlanivgkpysqifsefegnlnpsqahgsgdvkyhlgatgtyiqmfgdndievsl
tanpshleavdpvleglvrakqdlldtgeegsdnrfsvvplmlhgdaafagqgvvaetln
lallrgyrtggtihivvnnqigfttaptdsrsseyctdvakmigapifhvngddpeacaw
varlavdfrqafkkdvvidmlcyrrrghnegddpsmtqpymydvidtkrgsrkayteali
grgdismkeaedalrdyqgqlervfnevrelekheiepsesveadqqipsklatavdkam
lqrigdahlalpegftvhprvrpvlekrremayegridwafaellalgsliaegklvrls
gqdtqrgtftqrhavivdrktgeeftplqllatnpdgtptggkflvynsalsefaavgfe
ygysvgnpdamvlweaqfgdfvngaqsiidefissgeakwgqlsdvvlllphghegqgpd
htsgrierflqlwaegsmtiampstpanyfhllrrhgkdgiqrplivftpksmlrnkaav
sdirdfteskfrsvleepmytdgegdrnkvtrllltsgkiyyelaarkakenredvaivr
ieqlaplprrrlaetldrypnvkekfwvqeepanqgawpsfgltlpeilpdhftglkris
rramsapssgsskvhaveqqeildtafg

Sequence, based on observed residues (ATOM records):

>2y0pB (B:)
dknarvieliaayrnrghlmadidplrldnwdldrefkvqrkklrdilsvlrdaycrhvg
veythilepeqqrwiqervetkhdkptvaeqkyilsklnaaeafetflqtkyvgqkrfsl
egaetvipmmdavidqcaehgldevviamphrgrlnvlanivgkpysqifsefegnlnps
qahgsgdvkyhlgatgtyiqmfgdndievsltanpshleavdpvleglvrakqdlldtge
egsdnrfsvvplmlhgdaafagqgvvaetlnlallrgyrtggtihivvnnqigfttaptd
srsseyctdvakmigapifhvngddpeacawvarlavdfrqafkkdvvidmlcyrrrghn
egddpsmtqpymydvidtkrgsrkaytealigrgdismkeaedalrdyqgqlervfnevr
elekheiepsesveadqqipsklatavdkamlqrigdahlalpegftvhprvrpvlekrr
emayegridwafaellalgsliaegklvrlsgqdtqrgtftqrhavivdrktgeeftplq
llatnpdgtptggkflvynsalsefaavgfeygysvgnpdamvlweaqfgdfvngaqsii
defissgeakwgqlsdvvlllphghegqgpdhtsgrierflqlwaegsmtiampstpany
fhllrrhgkdgiqrplivftpksmlrnkaavsdirdfteskfrsvleepmytdgegdrnk
vtrllltsgkiyyelaarkakenredvaivrieqlaplprrrlaetldrypnvkekfwvq
eepanqgawpsfgltlpeilpdhftglkrisrramsapssgsskvhaveqqeildtafg

Chain 'C':
Sequence, based on SEQRES records:

>2y0pC (C:)
gdsiedknarvieliaayrnrghlmadidplrldntrfrshpdldvnshgltlwdldref
kvdgfagvqrkklrdilsvlrdaycrhvgveythilepeqqrwiqervetkhdkptvaeq
kyilsklnaaeafetflqtkyvgqkrfslegaetvipmmdavidqcaehgldevviamph
rgrlnvlanivgkpysqifsefegnlnpsqahgsgdvkyhlgatgtyiqmfgdndievsl
tanpshleavdpvleglvrakqdlldtgeegsdnrfsvvplmlhgdaafagqgvvaetln
lallrgyrtggtihivvnnqigfttaptdsrsseyctdvakmigapifhvngddpeacaw
varlavdfrqafkkdvvidmlcyrrrghnegddpsmtqpymydvidtkrgsrkayteali
grgdismkeaedalrdyqgqlervfnevrelekheiepsesveadqqipsklatavdkam
lqrigdahlalpegftvhprvrpvlekrremayegridwafaellalgsliaegklvrls
gqdtqrgtftqrhavivdrktgeeftplqllatnpdgtptggkflvynsalsefaavgfe
ygysvgnpdamvlweaqfgdfvngaqsiidefissgeakwgqlsdvvlllphghegqgpd
htsgrierflqlwaegsmtiampstpanyfhllrrhgkdgiqrplivftpksmlrnkaav
sdirdfteskfrsvleepmytdgegdrnkvtrllltsgkiyyelaarkakenredvaivr
ieqlaplprrrlaetldrypnvkekfwvqeepanqgawpsfgltlpeilpdhftglkris
rramsapssgsskvhaveqqeildtafg

Sequence, based on observed residues (ATOM records):

>2y0pC (C:)
edknarvieliaayrnrghlmadidplrldntrfnshgltlwdldrefkvdgfagvqrkk
lrdilsvlrdaycrhvgveythilepeqqrwiqervetkhdkptvaeqkyilsklnaaea
fetflqtkyvgqkrfslegaetvipmmdavidqcaehgldevviamphrgrlnvlanivg
kpysqifsefegnlnpsqahgsgdvkyhlgatgtyiqmfgdndievsltanpshleavdp
vleglvrakqdlldtgeegsdnrfsvvplmlhgdaafagqgvvaetlnlallrgyrtggt
ihivvnnqigfttaptdsrsseyctdvakmigapifhvngddpeacawvarlavdfrqaf
kkdvvidmlcyrrrghnegddpsmtqpymydvidtkrgsrkaytealigrgdismkeaed
alrdyqgqlervfnevrelekheiepsesveadqqipsklatavdkamlqrigdahlalp
egftvhprvrpvlekrremayegridwafaellalgsliaegklvrlsgqdtqrgtftqr
havivdrktgeeftplqllatnpdgtptggkflvynsalsefaavgfeygysvgnpdamv
lweaqfgdfvngaqsiidefissgeakwgqlsdvvlllphghegqgpdhtsgrierflql
waegsmtiampstpanyfhllrrhgkdgiqrplivftpksmlrnkaavsdirdfteskfr
svleepmytdgegdrnkvtrllltsgkiyyelaarkakenredvaivrieqlaplprrrl
aetldrypnvkekfwvqeepanqgawpsfgltlpeilpdhftglkrisrramsapssgss
kvhaveqqeildtafg

Chain 'D':
Sequence, based on SEQRES records:

>2y0pD (D:)
gdsiedknarvieliaayrnrghlmadidplrldntrfrshpdldvnshgltlwdldref
kvdgfagvqrkklrdilsvlrdaycrhvgveythilepeqqrwiqervetkhdkptvaeq
kyilsklnaaeafetflqtkyvgqkrfslegaetvipmmdavidqcaehgldevviamph
rgrlnvlanivgkpysqifsefegnlnpsqahgsgdvkyhlgatgtyiqmfgdndievsl
tanpshleavdpvleglvrakqdlldtgeegsdnrfsvvplmlhgdaafagqgvvaetln
lallrgyrtggtihivvnnqigfttaptdsrsseyctdvakmigapifhvngddpeacaw
varlavdfrqafkkdvvidmlcyrrrghnegddpsmtqpymydvidtkrgsrkayteali
grgdismkeaedalrdyqgqlervfnevrelekheiepsesveadqqipsklatavdkam
lqrigdahlalpegftvhprvrpvlekrremayegridwafaellalgsliaegklvrls
gqdtqrgtftqrhavivdrktgeeftplqllatnpdgtptggkflvynsalsefaavgfe
ygysvgnpdamvlweaqfgdfvngaqsiidefissgeakwgqlsdvvlllphghegqgpd
htsgrierflqlwaegsmtiampstpanyfhllrrhgkdgiqrplivftpksmlrnkaav
sdirdfteskfrsvleepmytdgegdrnkvtrllltsgkiyyelaarkakenredvaivr
ieqlaplprrrlaetldrypnvkekfwvqeepanqgawpsfgltlpeilpdhftglkris
rramsapssgsskvhaveqqeildtafg

Sequence, based on observed residues (ATOM records):

>2y0pD (D:)
siedknarvieliaayrnrghlmadidplrldtlwdldrefkrkklrdilsvlrdaycrh
vgveythilepeqqrwiqervetkhdkptvaeqkyilsklnaaeafetflqtkyvgqkrf
slegaetvipmmdavidqcaehgldevviamphrgrlnvlanivgkpysqifsefegnln
hgsgdvkyhlgatgtyiqmfgdndievsltanpshleavdpvleglvrakqdlldtgeeg
sdnrfsvvplmlhgdaafagqgvvaetlnlallrgyrtggtihivvnnqigfttaptdsr
sseyctdvakmigapifhvngddpeacawvarlavdfrqafkkdvvidmlcyrrrghneg
ddpsmtqpymydvidtkrgsrkaytealigrgdismkeaedalrdyqgqlervfnevrel
ekheiepsesveadqqipsklatavdkamlqrigdahlalpegftvhprvrpvlekrrem
ayegridwafaellalgsliaegklvrlsgqdtqrgtftqrhavivdrktgeeftplqll
atnpdgtptggkflvynsalsefaavgfeygysvgnpdamvlweaqfgdfvngaqsiide
fissgeakwgqlsdvvlllphghegqgpdhtsgrierflqlwaegsmtiampstpanyfh
llrrhgkdgiqrplivftpksmlrnkaavsdirdfteskfrsvleepmytdgegdrnkvt
rllltsgkiyyelaarkakenredvaivrieqlaplprrrlaetldrypnvkekfwvqee
panqgawpsfgltlpeilpdhftglkrisrramsapssgsskvhaveqqeildtafg