PDB entry 2y07

View 2y07 on RCSB PDB site
Description: crystal structure analysis of the anti-(4-hydroxy-3-nitrophenyl) - acetyl murine germline monoclonal antibody bbe6.12h3 fab fragment in complex with a phage display derived dodecapeptide ppypawhapgni
Deposited on 2010-11-30, released 2011-12-28
The last revision was dated 2012-02-15, with a file datestamp of 2012-02-10.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.2344
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: anti-np murine germline monoclonal antibody bbe6.12h3, heavy chain
    Species: MUS MUSCULUS [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 2Y07 (0-219)
  • Chain 'L':
    Compound: anti-np murine germline monoclonal antibody bbe6.12h3, light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 2Y07 (0-210)
  • Chain 'P':
    Compound: phage display derived antigen
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 2Y07 (0-End)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'H':
    Sequence, based on SEQRES records:
    >2y07H (H:)
qvqlqqpgaelvkpgasvklsckasgytftsywmhwvkqrpgrglewigridpnsggtay
nekfkskatltvdkpsstaymalssltsadsavyycarydyyggsyfdywgqgttltvss
ggttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsd
lytlsssvtvpsspwpsetvtcnvahpasstavdkaivpr

    Sequence, based on observed residues (ATOM records):
    >2y07H (H:)
qvqlqqpgaelvkpgasvklsckasgytftsywmhwvkqrpgrglewigridpnsggtay
nekfkskatltvdkpsstaymalssltsadsavyycarydyyggsyfdywgqgttltvss
ggttppsvyplapgssmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytls
ssvtvpsspwpsetvtcnvahpasstavdkaivpr

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >2y07L (L:)
qavvtqesalttspgetvtltcrsstgavttsnyanwvqekpdhlftgliggtnnrapgv
parfsgsligdkaaltitggqtedeaiyfcalwysnhwvfgggtaltvlgqpksspsvtl
fppsseeletntatlvctitdfypgvvtvdwtvdgtpvtqgmettqpskqsnnkymassy
ltltaaawerhssyscqvtheghtvekslsr

  • Chain 'P':
    Sequence, based on SEQRES records:
    >2y07P (P:)
ppypawhapgni

    Sequence, based on observed residues (ATOM records):
    >2y07P (P:)
ppypaw