PDB entry 2y06
View 2y06 on RCSB PDB site
Description: crystal structure analysis of the anti-(4-hydroxy-3-nitrophenyl) - acetyl murine germline antibody bbe6.12h3 fab fragment in complex with a phage display derived dodecapeptide gdprpsyishll
Deposited on
2010-11-30, released
2011-12-28
The last revision was dated
2019-10-16, with a file datestamp of
2019-10-11.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.19
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'H':
Compound: anti-np murine germline monoclonal antibody bbe6.12h3, heavy chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: anti-np murine germline monoclonal antibody bbe6.12h3, light chain
Species: MUS MUSCULUS [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Chain 'P':
Compound: phage display derived antigen
Species: synthetic construct, synthetic [TaxId:32630]
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.
- Chain 'H':
Sequence, based on SEQRES records:
>2y06H (H:)
qvqlqqpgaelvkpgasvklsckasgytftsywmhwvkqrpgrglewigridpnsggtay
nekfkskatltvdkpsstaymalssltsadsavyycarydyyggsyfdywgqgttltvss
ggttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsd
lytlsssvtvpsspwpsetvtcnvahpasstavdkaivpr
Sequence, based on observed residues (ATOM records):
>2y06H (H:)
qvqlqqpgaelvkpgasvklsckasgytftsywmhwvkqrpgrglewigridpnsggtay
nekfkskatltvdkpsstaymalssltsadsavyycarydyyggsyfdywgqgttltvss
ggttppsvyplapgssmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytls
ssvtvpsspwpsetvtcnvahpasstavdkaivpr
- Chain 'L':
Sequence; same for both SEQRES and ATOM records:
>2y06L (L:)
qavvtqesalttspgetvtltcrsstgavttsnyanwvqekpdhlftgliggtnnrapgv
parfsgsligdkaaltitggqtedeaiyfcalwysnhwvfgggtkltvlgqpksspsvtl
fppsseelatntatlvctitdfypgvvtvdwtvdgtpvtqgmettqpskqsnnkymassy
ltltaaawerhssyscqvtheghtvekslsr
- Chain 'P':
Sequence, based on SEQRES records:
>2y06P (P:)
gdprpsyishll
Sequence, based on observed residues (ATOM records):
>2y06P (P:)
dprpsyishl