PDB entry 2y06

View 2y06 on RCSB PDB site
Description: crystal structure analysis of the anti-(4-hydroxy-3-nitrophenyl) - acetyl murine germline antibody bbe6.12h3 fab fragment in complex with a phage display derived dodecapeptide gdprpsyishll
Deposited on 2010-11-30, released 2011-12-28
The last revision was dated 2019-10-16, with a file datestamp of 2019-10-11.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: anti-np murine germline monoclonal antibody bbe6.12h3, heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 2Y06 (0-219)
  • Chain 'L':
    Compound: anti-np murine germline monoclonal antibody bbe6.12h3, light chain
    Species: MUS MUSCULUS [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 2Y06 (0-210)
  • Chain 'P':
    Compound: phage display derived antigen
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 2Y06
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'H':
    Sequence, based on SEQRES records:
    >2y06H (H:)
    qvqlqqpgaelvkpgasvklsckasgytftsywmhwvkqrpgrglewigridpnsggtay
    nekfkskatltvdkpsstaymalssltsadsavyycarydyyggsyfdywgqgttltvss
    ggttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsd
    lytlsssvtvpsspwpsetvtcnvahpasstavdkaivpr
    

    Sequence, based on observed residues (ATOM records):
    >2y06H (H:)
    qvqlqqpgaelvkpgasvklsckasgytftsywmhwvkqrpgrglewigridpnsggtay
    nekfkskatltvdkpsstaymalssltsadsavyycarydyyggsyfdywgqgttltvss
    ggttppsvyplapgssmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytls
    ssvtvpsspwpsetvtcnvahpasstavdkaivpr
    

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >2y06L (L:)
    qavvtqesalttspgetvtltcrsstgavttsnyanwvqekpdhlftgliggtnnrapgv
    parfsgsligdkaaltitggqtedeaiyfcalwysnhwvfgggtkltvlgqpksspsvtl
    fppsseelatntatlvctitdfypgvvtvdwtvdgtpvtqgmettqpskqsnnkymassy
    ltltaaawerhssyscqvtheghtvekslsr
    

  • Chain 'P':
    Sequence, based on SEQRES records:
    >2y06P (P:)
    gdprpsyishll
    

    Sequence, based on observed residues (ATOM records):
    >2y06P (P:)
    dprpsyishl