PDB entry 2xs8

View 2xs8 on RCSB PDB site
Description: crystal structure of alix in complex with the sivagmtan-1 aydparkll late domain
Deposited on 2010-09-24, released 2010-11-03
The last revision was dated 2010-12-22, with a file datestamp of 2010-12-17.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.2068
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Programmed cell death 6-interacting protein
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8WUM4 (Start-703)
      • engineered mutation (273-274)
  • Chain 'B':
    Compound: sivagmtan-1 gag p6
    Species: SIMIAN IMMUNODEFICIENCY VIRUS, synthetic [TaxId:11723]
    Database cross-references and differences (RAF-indexed):
    • PDB 2XS8
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2xs8A (A:)
gidpftmatfisvqlkktsevdlakplvkfiqqtypsggeeqaqycraaeelsklrraav
grpldkhegaletllryydqicsiepkfpfsenqicltftwkdafdkgslfggsvklala
slgyekscvlfncaalasqiaaeqnldndeglkiaakhyqfasgaflhiketvlsalsre
ptvdispdtvgtlslimlaqaqevfflkatrdkmkdaiiaklanqaadyfgdafkqcqyk
dtlpkevfpvlaakhcimqanaeyhqsilakqqyyfgeeiarlqhaaeliktvasrydey
vnvkdfsdkinralaaakkdndfiyhdrvpdlkdldpigkatlvkstpvnvpisqkftdl
fekmvpvsvqqslaaynqrkadlvnrsiaqmreattlangvlaslnlpaaiedvsgdtvp
qsiltksrsvieqggiqtvdqlikelpellqrnreildeslrlldeeeatdndlrakfke
rwqrtpsnelykplraegtnfrtvldkavqadgqvkecyqshrdtivllckpepelnaai
psanpaktmqgsevvnvlksllsnldevkkereglendlksvnfdmtskfltalaqdgvi
neealsvteldrvygglttkvqeslkkqegllkniqvshqefskmkqsnneanlreevlk
nlataydnfvelvanlkegtkfynelteilvrfqnkcsdivfar

    Sequence, based on observed residues (ATOM records):
    >2xs8A (A:)
atfisvqlkktsevdlakplvkfiqqtypsggeeqaqycraaeelsklrraavgrpldkh
egaletllryydqicsiepkfpfsenqicltftwkdafdkgslfggsvklalaslgyeks
cvlfncaalasqiaaeqnldndeglkiaakhyqfasgaflhiketvlsalsreptvdisp
dtvgtlslimlaqaqevfflkatrdkmkdaiiaklanqaadyfgdafkqcqykdtlpkev
fpvlaakhcimqanaeyhqsilakqqyyfgeeiarlqhaaeliktvasrydeyvnvkdfs
dkinralaaakkdndfiyhdrvpdlkdldpigkatlvkstpvnvpisqkftdlfekmvpv
svqqslaaynqrkadlvnrsiaqmreattlangvlaslnlpaaiedvsgdtvpqsiltks
rsvieqggiqtvdqlikelpellqrnreildeslrlldeeeatdndlrakfkerwqrtps
nelykplraegtnfrtvldkavqadgqvkecyqshrdtivllckpepelnaaipsanpak
tmqgsevvnvlksllsnldevkkereglendlksvnfdmtskfltalaqdgvineealsv
teldrvygglttkvqeslkkqegllkniqvshqefskmkqsnneanlreevlknlatayd
nfvelvanlkegtkfynelteilvrfqnkcsdivfar

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2xs8B (B:)
aagaydparklleqyakk

    Sequence, based on observed residues (ATOM records):
    >2xs8B (B:)
aydparkll