PDB entry 2xrz

View 2xrz on RCSB PDB site
Description: x-ray structure of archaeal class ii cpd photolyase from methanosarcina mazei in complex with intact cpd-lesion
Deposited on 2010-09-24, released 2011-09-14
The last revision was dated 2011-11-16, with a file datestamp of 2011-11-11.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.17093
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Deoxyribodipyrimidine photolyase
    Species: Methanosarcina mazei [TaxId:192952]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8PYK9 (20-End)
      • expression tag (19)
      • engineered mutation (394)
  • Chain 'B':
    Compound: Deoxyribodipyrimidine photolyase
    Species: Methanosarcina mazei [TaxId:192952]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8PYK9 (20-End)
      • expression tag (13-19)
      • engineered mutation (394)
  • Chain 'C':
    Compound: cpd-comprising oligonucleotide
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'D':
    Compound: counterstrand-oligonucleotide
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'E':
    Compound: cpd-comprising oligonucleotide
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'F':
    Compound: counterstrand-oligonucleotide
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: FAD, SO4, GOL, ACT, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2xrzA (A:)
    mgsshhhhhhssglvprgshmnpkriralksgkqgdgpvvywmsrdqraednwallfsra
    iakeanvpvvvvfcltdefleagirqyefmlkglqelevslsrkkipsfflrgdpgekis
    rfvkdynagtlvtdfsplriknqwiekvisgisipffevdahnvvpcweasqkheyaaht
    frpklyallpefleefpelepnsvtpelsagagmvetlsdvletgvkallperallknkd
    plfepwhfepgekaakkvmesfiadrldsygalrndptknmlsnlspylhfgqissqrvv
    levekaesnpgskkafldeiliwkeisdnfcyynpgydgfesfpswakeslnahrndvrs
    hiytleefeagkthdplwnasqmellstgkmhgytrmywakkilewsespekaleiaicl
    ndryeldgrdpngyagiawsiggvhdrawgerevtgkirymsyegckrkfdvklyiekys
    al
    

    Sequence, based on observed residues (ATOM records):
    >2xrzA (A:)
    hmnpkriralksgkqgdgpvvywmsrdqraednwallfsraiakeanvpvvvvfcltdef
    leagirqyefmlkglqelevslsrkkipsfflrgdpgekisrfvkdynagtlvtdfsplr
    iknqwiekvisgisipffevdahnvvpcweasqkheyaahtfrpklyallpefleefpel
    epnsvetlsdvletgvkallperallknkdplfepwhfepgekaakkvmesfiadrldsy
    galrndptknmlsnlspylhfgqissqrvvlevekaesnpgskkafldeiliwkeisdnf
    cyynpgydgfesfpswakeslnahrndvrshiytleefeagkthdplwnasqmellstgk
    mhgytrmywakkilewsespekaleiaiclndryeldgrdpngyagiawsiggvhdrawg
    erevtgkirymsyegckrkfdvklyiekys
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2xrzB (B:)
    mgsshhhhhhssglvprgshmnpkriralksgkqgdgpvvywmsrdqraednwallfsra
    iakeanvpvvvvfcltdefleagirqyefmlkglqelevslsrkkipsfflrgdpgekis
    rfvkdynagtlvtdfsplriknqwiekvisgisipffevdahnvvpcweasqkheyaaht
    frpklyallpefleefpelepnsvtpelsagagmvetlsdvletgvkallperallknkd
    plfepwhfepgekaakkvmesfiadrldsygalrndptknmlsnlspylhfgqissqrvv
    levekaesnpgskkafldeiliwkeisdnfcyynpgydgfesfpswakeslnahrndvrs
    hiytleefeagkthdplwnasqmellstgkmhgytrmywakkilewsespekaleiaicl
    ndryeldgrdpngyagiawsiggvhdrawgerevtgkirymsyegckrkfdvklyiekys
    al
    

    Sequence, based on observed residues (ATOM records):
    >2xrzB (B:)
    lvprgshmnpkriralksgkqgdgpvvywmsrdqraednwallfsraiakeanvpvvvvf
    cltdefleagirqyefmlkglqelevslsrkkipsfflrgdpgekisrfvkdynagtlvt
    dfsplriknqwiekvisgisipffevdahnvvpcweasqkheyaahtfrpklyallpefl
    eefpelepnsvtkdplfepwhfepgekaakkvmesfiadrldsygalrndptknmlsnls
    pylhfgqissqrvvlevekaesnpgskkafldeiliwkeisdnfcyynpgydgfesfpsw
    akeslnahrndvrshiytleefeagkthdplwnasqmellstgkmhgytrmywakkilew
    sespekaleiaiclndryeldgrdpngyagiawsiggvhdrawgerevtgkirymsyegc
    krkfdvklyiekys
    

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.