SCOPe 2.08: Structural Classification of Proteins

PDB entry 2xrx

View 2xrx on RCSB PDB site
Description: crystal structure of biphenyl dioxygenase in complex with biphenyl from burkholderia xenovorans lb400
Class: oxidoreductase
Keywords: oxidoreductase, degradation, bpdo
Deposited on 2010-09-23, released 2010-11-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-02-16, with a file datestamp of 2011-02-11.
Experiment type: XRAY
Resolution: 2.42 Å
R-factor: 0.23302
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xrxa1, d2xrxa2
Chain 'B':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xrxb_
Chain 'C':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xrxc1, d2xrxc2
Chain 'D':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xrxd_
Chain 'E':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xrxe1, d2xrxe2
Chain 'F':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xrxf_
Chain 'G':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xrxg1, d2xrxg2
Chain 'H':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xrxh_
Chain 'I':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xrxi1, d2xrxi2
Chain 'J':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xrxj_
Chain 'K':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xrxk1, d2xrxk2
Chain 'L':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xrxl_
Chain 'M':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xrxm1, d2xrxm2
Chain 'N':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xrxn_
Chain 'O':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xrxo1, d2xrxo2
Chain 'P':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xrxp_
Chain 'Q':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xrxq1, d2xrxq2
Chain 'R':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xrxr_
Chain 'S':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xrxs1, d2xrxs2
Chain 'T':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xrxt_
Chain 'U':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xrxu1, d2xrxu2
Chain 'V':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xrxv_
Chain 'W':
Compound: Biphenyl dioxygenase subunit alpha
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
Domains in SCOPe 2.08: d2xrxw1, d2xrxw2
Chain 'X':
Compound: Biphenyl dioxygenase subunit beta
Species: BURKHOLDERIA XENOVORANS [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.08: d2xrxx_
Heterogens: FES, FE2, BNL, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>2xrxA (A:)
mssaikevqgapvkwvtnwtpeairglvdqekglldpriyadqslyelelervfgrswll
lgheshvpetgdflatymgedpvvmvrqkdksikvflnqcrhrgmricrsdagnakaftc
syhgwaydiagklvnvpfekeafcdkkegdcgfdkaewgplqarvatykglvfanwdvqa
pdletylgdarpymdvmldrtpagtvaiggmqkwvipcnwkfaaeqfcsdmyhagttthl
sgilagippemdlsqaqiptkgnqfraawgghgsgwyvdepgsllavmgpkvtqywtegp
aaelaeqrlghtgmpvrrmvgqhmtifptcsflptfnniriwhprgpneievwaftlvda
dapaeikeeyrrhnirnfsaggvfeqddgenwveiqkglrgykaksqplnaqmglgrsqt
ghpdfpgnvgyvyaeeaargmyhhwmrmmsepswatlkp