PDB entry 2xnd

View 2xnd on RCSB PDB site
Description: crystal structure of bovine f1-c8 sub-complex of atp synthase
Deposited on 2010-08-02, released 2010-09-15
The last revision was dated 2011-11-16, with a file datestamp of 2011-11-11.
Experiment type: XRAY
Resolution: 3.5 Å
R-factor: 0.26341
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ATP synthase subunit alpha, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19483 (0-491)
      • cloning artifact (462)
  • Chain 'B':
    Compound: ATP synthase subunit alpha, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19483 (0-491)
      • cloning artifact (462)
  • Chain 'C':
    Compound: ATP synthase subunit alpha, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19483 (0-491)
      • cloning artifact (462)
  • Chain 'D':
    Compound: ATP synthase subunit beta, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: ATP synthase subunit beta, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: ATP synthase subunit beta, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: ATP synthase subunit gamma, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: ATP synthase subunit delta, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: ATP synthase subunit epsilon, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: ATP synthase lipid-binding protein, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: ATP synthase lipid-binding protein, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: ATP synthase lipid-binding protein, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: ATP synthase lipid-binding protein, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: ATP synthase lipid-binding protein, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: ATP synthase lipid-binding protein, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: ATP synthase lipid-binding protein, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: ATP synthase lipid-binding protein, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ANP, MG, GOL, SO4

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >2xndA (A:)
adtsvdleetgrvlsigdgiarvhglrnvqaeemvefssglkgmslnlepdnvgvvvfgn
dklikegdivkrtgaivdvpvgeellgrvvdalgnaidgkgpigskarrrvglkapgiip
risvrepmqtgikavdslvpigrgqreliigdrqtgktsiaidtiinqkrfndgtdekkk
lyciyvaigqkrstvaqlvkrltdadamkytivvsatasdaaplqylapysgcsmgeyfr
dngkhaliiyddlskqavayrqmslllrrppgreaypgdvfylhsrlleraakmndafgg
gsltalpvietqagdvsayiptnvisitdgqifletelfykgirpainvglsvsrvgsaa
qtramkqvagtmklelaqyrevaafaqfgsdldaatqqllsrgvrltellkqgqyspmai
eeqvaviyagvrgyldklepskitkfenaflshvisqhqallgkirtdgkiseesdaklk
eivtnflagfea

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >2xndB (B:)
adtsvdleetgrvlsigdgiarvhglrnvqaeemvefssglkgmslnlepdnvgvvvfgn
dklikegdivkrtgaivdvpvgeellgrvvdalgnaidgkgpigskarrrvglkapgiip
risvrepmqtgikavdslvpigrgqreliigdrqtgktsiaidtiinqkrfndgtdekkk
lyciyvaigqkrstvaqlvkrltdadamkytivvsatasdaaplqylapysgcsmgeyfr
dngkhaliiyddlskqavayrqmslllrrppgreaypgdvfylhsrlleraakmndafgg
gsltalpvietqagdvsayiptnvisitdgqifletelfykgirpainvglsvsrvgsaa
qtramkqvagtmklelaqyrevaafaqfgsdldaatqqllsrgvrltellkqgqyspmai
eeqvaviyagvrgyldklepskitkfenaflshvisqhqallgkirtdgkiseesdaklk
eivtnflagfea

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >2xndC (C:)
adtsvdleetgrvlsigdgiarvhglrnvqaeemvefssglkgmslnlepdnvgvvvfgn
dklikegdivkrtgaivdvpvgeellgrvvdalgnaidgkgpigskarrrvglkapgiip
risvrepmqtgikavdslvpigrgqreliigdrqtgktsiaidtiinqkrfndgtdekkk
lyciyvaigqkrstvaqlvkrltdadamkytivvsatasdaaplqylapysgcsmgeyfr
dngkhaliiyddlskqavayrqmslllrrppgreaypgdvfylhsrlleraakmndafgg
gsltalpvietqagdvsayiptnvisitdgqifletelfykgirpainvglsvsrvgsaa
qtramkqvagtmklelaqyrevaafaqfgsdldaatqqllsrgvrltellkqgqyspmai
eeqvaviyagvrgyldklepskitkfenaflshvisqhqallgkirtdgkiseesdaklk
eivtnflagfea

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >2xndD (D:)
ttgrivavigavvdvqfdeglppilnalevqgretrlvlevaqhlgestvrtiamdgteg
lvrgqkvldsgapiripvgpetlgrimnvigepidergpiktkqfaaihaeapefvemsv
eqeilvtgikvvdllapyakggkiglfggagvgktvlimelinnvakahggysvfagvge
rtregndlyhemiesgvinlkdatskvalvygqmneppgararvaltgltvaeyfrdqeg
qdvllfidnifrftqagsevsallgripsavgyqptlatdmgtmqeritttkkgsitsvq
aiyvpaddltdpapattfahldattvlsraiaelgiypavdpldstsrimdpnivgsehy
dvargvqkilqdykslqdiiailgmdelseedkltvsrarkiqrflsqpfqvaevftghl
gklvplketikgfqqilageydhlpeqafymvgpieeavakadklae

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2xndE (E:)
ttgrivavigavvdvqfdeglppilnalevqgretrlvlevaqhlgestvrtiamdgteg
lvrgqkvldsgapiripvgpetlgrimnvigepidergpiktkqfaaihaeapefvemsv
eqeilvtgikvvdllapyakggkiglfggagvgktvlimelinnvakahggysvfagvge
rtregndlyhemiesgvinlkdatskvalvygqmneppgararvaltgltvaeyfrdqeg
qdvllfidnifrftqagsevsallgripsavgyqptlatdmgtmqeritttkkgsitsvq
aiyvpaddltdpapattfahldattvlsraiaelgiypavdpldstsrimdpnivgsehy
dvargvqkilqdykslqdiiailgmdelseedkltvsrarkiqrflsqpfqvaevftghl
gklvplketikgfqqilageydhlpeqafymvgpieeavakadklae

    Sequence, based on observed residues (ATOM records):
    >2xndE (E:)
ttgrivavigavvdvqfdeglppilnalevqgretrlvlevaqhlgestvrtiamdgteg
lvrgqkvldsgapiripvgpetlgrimnvigepidergpiktkqfaaihaeapefvemsv
eqeilvtgikvvdllapyakggkiglfggagvgktvlimelinnvakahggysvfagvge
rtregndlyhemiesgvinlkdatskvalvygqmneppgararvaltgltvaeyfrdqeg
qdvllfidnifrftqagsevsallgripsavgyqptlatdmgtmqeritttkkgsitsvq
aiyvpaddltdpapattfahldattvlsraiaelgiypavdpldstsrimdpnivgsehy
dvargvqkilqdykslqdiiailgmdelseedkltvsrarkiqrflsqpfqvaevftghl
gklvplketikgfqqilageydhlpeqafymvgpieeavakadkla

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2xndF (F:)
ttgrivavigavvdvqfdeglppilnalevqgretrlvlevaqhlgestvrtiamdgteg
lvrgqkvldsgapiripvgpetlgrimnvigepidergpiktkqfaaihaeapefvemsv
eqeilvtgikvvdllapyakggkiglfggagvgktvlimelinnvakahggysvfagvge
rtregndlyhemiesgvinlkdatskvalvygqmneppgararvaltgltvaeyfrdqeg
qdvllfidnifrftqagsevsallgripsavgyqptlatdmgtmqeritttkkgsitsvq
aiyvpaddltdpapattfahldattvlsraiaelgiypavdpldstsrimdpnivgsehy
dvargvqkilqdykslqdiiailgmdelseedkltvsrarkiqrflsqpfqvaevftghl
gklvplketikgfqqilageydhlpeqafymvgpieeavakadklae

    Sequence, based on observed residues (ATOM records):
    >2xndF (F:)
ttgrivavigavvdvqfdeglppilnalevqgretrlvlevaqhlgestvrtiamdgteg
lvrgqkvldsgapiripvgpetlgrimnvigepidergpiktkqfaaihaeapefvemsv
eqeilvtgikvvdllapyakggkiglfggagvgktvlimelinnvakahggysvfagvge
rtregndlyhemiesgvinlkdatskvalvygqmneppgararvaltgltvaeyfrdqeg
qdvllfidnifrftqagsevsallgripsavgyqptlatdmgtmqeritttkkgsitsvq
aiyvpaddltdpapattfahldattvlsraiaelgiypavdpldstsrimdpnivgsehy
dvargvqkilqdykslqdiiailgmdelseedkltvsrarkiqrflsqpfqvaevftghl
gklvplketikgfqqilageydhlpeqafymvgpieeavakadkla

  • Chain 'G':
    Sequence, based on SEQRES records:
    >2xndG (G:)
atlkditrrlksikniqkitksmkmvaaakyaraerelkparvygvgslalyekadiktp
edkkkhliigvssdrglcgaihssvakqmkseaanlaaagkevkiigvgdkirsilhrth
sdqflvtfkevgrrpptfgdasvialellnsgyefdegsiifnrfrsvisykteekpifs
ldtissaesmsiyddidadvlrnyqeyslaniiyyslkesttseqsarmtamdnasknas
emidkltltfnrtrqavitkelieiisgaaal

    Sequence, based on observed residues (ATOM records):
    >2xndG (G:)
atlkditrrlksikniqkitksmkmvaaakyaraerelkparvygvgslalyekadiktp
eliigvssdrglcgaihssvakqmkseaanlkevkiigvgdkirsilhrthsdqflvtfk
evgrrpptfgdasvialellnsgyefdegsiifnrfrsvisykteekpifsldtissaes
msiyddidadvlrnyqeyslaniiyyslkesttseqsarmtamdnasknasemidkltlt
fnrtrqavitkelieiisgaaal

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >2xndH (H:)
qmsftfasptqvffnsanvrqvdvptqtgafgilaahvptlqvlrpglvvvhaedgttsk
yfvssgsvtvnadssvqllaeeavtldmldlgaakanlekaqsellgaadeatraeiqir
ieanealvkal

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >2xndI (I:)
vaywrqaglsyirysqicakavrdalktefkanamktsgstikivkv

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >2xndJ (J:)
idtaakfigagaatvgvagsgagigtvfgsliigyarnpslkqqlfsyailgfalseamg
lfclmvaflilf

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >2xndK (K:)
idtaakfigagaatvgvagsgagigtvfgsliigyarnpslkqqlfsyailgfalseamg
lfclmvaflilf

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >2xndL (L:)
idtaakfigagaatvgvagsgagigtvfgsliigyarnpslkqqlfsyailgfalseamg
lfclmvaflilf

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records:
    >2xndM (M:)
idtaakfigagaatvgvagsgagigtvfgsliigyarnpslkqqlfsyailgfalseamg
lfclmvaflilf

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records:
    >2xndN (N:)
idtaakfigagaatvgvagsgagigtvfgsliigyarnpslkqqlfsyailgfalseamg
lfclmvaflilf

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records:
    >2xndO (O:)
idtaakfigagaatvgvagsgagigtvfgsliigyarnpslkqqlfsyailgfalseamg
lfclmvaflilf

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records:
    >2xndP (P:)
idtaakfigagaatvgvagsgagigtvfgsliigyarnpslkqqlfsyailgfalseamg
lfclmvaflilf

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records:
    >2xndQ (Q:)
idtaakfigagaatvgvagsgagigtvfgsliigyarnpslkqqlfsyailgfalseamg
lfclmvaflilf