PDB entry 2xhb

View 2xhb on RCSB PDB site
Description: crystal structure of DNA polymerase from thermococcus gorgonarius in complex with hypoxanthine-containing DNA
Class: transferase/DNA
Keywords: transferase-DNA complex, replication, exonuclease, DNA damage, exo minus
Deposited on 2010-06-14, released 2010-07-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2010-07-21, with a file datestamp of 2010-07-16.
Experiment type: XRAY
Resolution: 2.72 Å
R-factor: 0.23676
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase
    Species: Thermococcus gorgonarius [TaxId:71997]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P56689 (0-756)
      • engineered mutation (214)
    Domains in SCOPe 2.08: d2xhba1, d2xhba2
  • Chain 'D':
    Compound: hypoxanthine-containing DNA
  • Chain 'E':
    Compound: 5'-d(*ap*ap*ap*ap*ap*ap*ap*ap*a)-3'
  • Heterogens: NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2xhbA (A:)
    mildtdyitedgkpvirifkkengefkidydrnfepyiyallkddsaiedvkkitaerhg
    ttvrvvraekvkkkflgrpievwklyfthpqdvpairdkikehpavvdiyeydipfakry
    lidkglipmegdeelkmlafdietlyhegeefaegpilmisyadeegarvitwknidlpy
    vdvvstekemikrflkvvkekdpdvlityngdnfafaylkkrseklgvkfilgregsepk
    iqrmgdrfavevkgrihfdlypvirrtinlptytleavyeaifgqpkekvyaeeiaqawe
    tgeglervarysmedakvtyelgkeffpmeaqlsrlvgqslwdvsrsstgnlvewfllrk
    ayernelapnkpderelarrresyaggyvkeperglwenivyldfrslypsiiithnvsp
    dtlnregceeydvapqvghkfckdfpgfipsllgdlleerqkvkkkmkatidpiekklld
    yrqraikilansfygyygyakarwyckecaesvtawgrqyiettireieekfgfkvlyad
    tdgffatipgadaetvkkkakefldyinaklpglleleyegfykrgffvtkkkyavidee
    dkittrgleivrrdwseiaketqarvleailkhgdveeavrivkevteklskyevppekl
    viyeqitrdlkdykatgphvavakrlaargikirpgtvisyivlkgsgrigdraipfdef
    dpakhkydaeyyienqvlpaverilrafgyrkedlryqktrqvglgawlkpkt
    

    Sequence, based on observed residues (ATOM records): (download)
    >2xhbA (A:)
    mildtdyitedgkpvirifkkengefkidydrnfepyiyallkddsaiedvkkitaerhg
    ttvrvvraekvkkkflgrpievwklyfthpqdvpairdkikehpavvdiyeydipfakry
    lidkglipmegdeelkmlafdietlefaegpilmisyadeegarvitwknidlpyvdvvs
    tekemikrflkvvkekdpdvlityngdnfafaylkkrseklgvkfilgregsepkiqrmg
    drfavevkgrihfdlypvirrtinlptytleavyeaifgqpkekvyaeeiaqawetgegl
    ervarysmedakvtyelgkeffpmeaqlsrlvgqslwdvsrsstgnlvewfllrkayern
    elapnkpdaggyvkeperglwenivyldfrslypsiiithnvspdtlnregceeydvapq
    vghkfckdfpgfipsllgdlleerqkvkkkmkatidpiekklldyrqraikilansfygy
    ygyakarwyckecaesvtawgrqyiettireieekfgfkvlyadtdgffatipgadaetv
    kkkakefldyinaklpglleleyegfykrgffvtkkkyavideedkittrgleivrrdws
    eiaketqarvleailkhgdveeavrivkevteklskyevppeklviyeqitrdlkdykat
    gphvavakrlaargikirpgtvisyivlkgsgrigdraipfdefdpakhkydaeyyienq
    vlpaverilrafgyrkedlry
    

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.