PDB entry 2xd5

View 2xd5 on RCSB PDB site
Description: structural insights into the catalytic mechanism and the role of streptococcus pneumoniae pbp1b
Deposited on 2010-04-29, released 2010-05-26
The last revision was dated 2010-05-26, with a file datestamp of 2010-05-21.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.184
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: penicillin-binding protein 1b
    Species: Streptococcus pneumoniae [TaxId:171101]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7CRA4
      • expression tag (4-18)
      • engineered mutation (388-389)
  • Chain 'B':
    Compound: penicillin-binding protein 1b
    Species: Streptococcus pneumoniae [TaxId:171101]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7CRA4
      • expression tag (4-23)
      • engineered mutation (388-389)
  • Heterogens: SO4, S2D, CL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2xd5A (A:)
    dissiseitysdgtviasiesdmlrqdflpsgtvtgisqdylyfttlaeaqermydylaq
    rdnvsakelkneatqkfyrdlaakeienggykitttidqkihsamqsavadygyllddgt
    grvevgnvlmdnqtgailgfvggrnyqenqnnhafdtkrspasttkpllaygiaidqglm
    gsetilsnyptnfangnpimyanskgtgmmtlgealnyswnipaywtyrmlrengvdvkg
    ymekmgyeipeygieslpmgggievtvaqhtngyqtlanngvyhqkhviskieaadgrvv
    yeyqdkpvqvyskatatimqgllrevlssrvtttfksnltslnptlanadwigktgttnq
    denmwlmlstprltlggwighddnhslsqqagysnnsnymahlvnaiqqaspsiwgnerf
    aldpsvvksevlkstgqkpgkvsvegkevevtgstvtsywanksgapatsyrfaiggsda
    dyqnawssivgslp
    

    Sequence, based on observed residues (ATOM records):
    >2xd5A (A:)
    iseitysdgtviasidylyfttlaeaqermydylaqrdnvsakelkneatqkfyrdlaak
    eienggykitttidqkihsamqsavadygyllddgtgrvevgnvlmdnqtgailgfvggr
    nyqenqnnhafdtkrspasttkpllaygiaidqglmgsetilsnyptnfangnpimyans
    kgtgmmtlgealnyswnipaywtyrmlrengvdvkgymekmgyeipeygieslpmgggie
    vtvaqhtngyqtlanngvyhqkhviskieaadgrvvyeyqdkpvqvyskatatimqgllr
    evlssrvtttfksnltslnptlanadwigktgttnqdenmwlmlstprltlggwighddn
    hslsqqagysnnsnymahlvnaiqqaspsiwgnerfaldpsvvksevlkstgqkpgkvsv
    egkevevtgstvtsywanksgapatsyrfaiggsdadyqnawssivgsl
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2xd5B (B:)
    dissiseitysdgtviasiesdmlrqdflpsgtvtgisqdylyfttlaeaqermydylaq
    rdnvsakelkneatqkfyrdlaakeienggykitttidqkihsamqsavadygyllddgt
    grvevgnvlmdnqtgailgfvggrnyqenqnnhafdtkrspasttkpllaygiaidqglm
    gsetilsnyptnfangnpimyanskgtgmmtlgealnyswnipaywtyrmlrengvdvkg
    ymekmgyeipeygieslpmgggievtvaqhtngyqtlanngvyhqkhviskieaadgrvv
    yeyqdkpvqvyskatatimqgllrevlssrvtttfksnltslnptlanadwigktgttnq
    denmwlmlstprltlggwighddnhslsqqagysnnsnymahlvnaiqqaspsiwgnerf
    aldpsvvksevlkstgqkpgkvsvegkevevtgstvtsywanksgapatsyrfaiggsda
    dyqnawssivgslp
    

    Sequence, based on observed residues (ATOM records):
    >2xd5B (B:)
    iseitysdgtviasiesdmldylyfttlaeaqermydylaqrdnvsaeatqkfyrdlaak
    eienggykitttidqkihsamqsavadygyllddgtgrvevgnvlmdnqtgailgfvggr
    nyqenqnnhafdtkrspasttkpllaygiaidqglmgsetilsnyptnfangnpimyans
    kgtgmmtlgealnyswnipaywtyrmlrengvdvkgymekmgyeipeygieslpmgggie
    vtvaqhtngyqtlanngvyhqkhviskieaadgrvvyeyqdkpvqvyskatatimqgllr
    evlssrvtttfksnltslnptlanadwigktgttnqdenmwlmlstprltlggwighddn
    hslsqqagysnnsnymahlvnaiqqaspsiwgnerfaldpsvvksevlkstgqkpgkvsv
    egkevevtgstvtsywanksgapatsyrfaiggsdadyqnawssivgs