PDB entry 2xd0

View 2xd0 on RCSB PDB site
Description: a processed non-coding rna regulates a bacterial antiviral system
Deposited on 2010-04-28, released 2011-01-12
The last revision was dated 2020-06-03, with a file datestamp of 2020-05-29.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: toxn
    Species: PECTOBACTERIUM ATROSEPTICUM [TaxId:29471]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: toxn
    Species: PECTOBACTERIUM ATROSEPTICUM [TaxId:29471]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: toxn
    Species: PECTOBACTERIUM ATROSEPTICUM [TaxId:29471]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: toxi
    Species: Pectobacterium atrosepticum, synthetic [TaxId:29471]
  • Chain 'H':
    Compound: toxi
    Species: Pectobacterium atrosepticum, synthetic [TaxId:29471]
  • Chain 'I':
    Compound: toxi
    Species: Pectobacterium atrosepticum, synthetic [TaxId:29471]
  • Chain 'U':
    Compound: toxi
    Species: Pectobacterium atrosepticum, synthetic [TaxId:29471]
  • Chain 'V':
    Compound: toxi
    Species: Pectobacterium atrosepticum, synthetic [TaxId:29471]
  • Chain 'W':
    Compound: toxi
    Species: Pectobacterium atrosepticum, synthetic [TaxId:29471]
  • Chain 'X':
    Compound: toxn
    Species: PECTOBACTERIUM ATROSEPTICUM [TaxId:29471]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Y':
    Compound: toxn
    Species: PECTOBACTERIUM ATROSEPTICUM [TaxId:29471]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Z':
    Compound: toxn
    Species: PECTOBACTERIUM ATROSEPTICUM [TaxId:29471]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2xd0A (A:)
mkfytisskyieylkefddkvpnsedptyqnpkafigivleiqghkylapltspkkwhnn
vkesslscfklhengvpenqlglinlkfmipiieaevslldlgnmpntpykrmlykqlqf
iransdkiasksdtlrnlvlqgkmqgtcnfslleekyrdfgkeaedteege

    Sequence, based on observed residues (ATOM records):
    >2xd0A (A:)
mkfytisskyieylkefddkvpnsedptyqnpkafigivleiqghkylapltspkkwhnn
vkesslscfklhengvpenqlglinlkfmipiieaevslldlgnmpntpykrmlykqlqf
iransdkiasksdtlrnlvlqgkmqgtcnfslleekyrdfgk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2xd0B (B:)
mkfytisskyieylkefddkvpnsedptyqnpkafigivleiqghkylapltspkkwhnn
vkesslscfklhengvpenqlglinlkfmipiieaevslldlgnmpntpykrmlykqlqf
iransdkiasksdtlrnlvlqgkmqgtcnfslleekyrdfgkeaedteege

    Sequence, based on observed residues (ATOM records):
    >2xd0B (B:)
mkfytisskyieylkefddkvpnsedptyqnpkafigivleiqghkylapltspkkwhnn
vkesslscfklhengvpenqlglinlkfmipiieaevslldlgnmpntpykrmlykqlqf
iransdkiasksdtlrnlvlqgkmqgtcnfslleekyrdfgk

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2xd0E (E:)
mkfytisskyieylkefddkvpnsedptyqnpkafigivleiqghkylapltspkkwhnn
vkesslscfklhengvpenqlglinlkfmipiieaevslldlgnmpntpykrmlykqlqf
iransdkiasksdtlrnlvlqgkmqgtcnfslleekyrdfgkeaedteege

    Sequence, based on observed residues (ATOM records):
    >2xd0E (E:)
mkfytisskyieylkefddkvpnsedptyqnpkafigivleiqghkylapltspkkwhnn
vkesslscfklhengvpenqlglinlkfmipiieaevslldlgnmpntpykrmlykqlqf
iransdkiasksdtlrnlvlqgkmqgtcnfslleekyrdfgk

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'U':
    No sequence available.

  • Chain 'V':
    No sequence available.

  • Chain 'W':
    No sequence available.

  • Chain 'X':
    Sequence, based on SEQRES records:
    >2xd0X (X:)
mkfytisskyieylkefddkvpnsedptyqnpkafigivleiqghkylapltspkkwhnn
vkesslscfklhengvpenqlglinlkfmipiieaevslldlgnmpntpykrmlykqlqf
iransdkiasksdtlrnlvlqgkmqgtcnfslleekyrdfgkeaedteege

    Sequence, based on observed residues (ATOM records):
    >2xd0X (X:)
mkfytisskyieylkefddkvpnsedptyqnpkafigivleiqghkylapltspkkwhnn
vkesslscfklhengvpenqlglinlkfmipiieaevslldlgnmpntpykrmlykqlqf
iransdkiasksdtlrnlvlqgkmqgtcnfslleekyrdfgk

  • Chain 'Y':
    Sequence, based on SEQRES records:
    >2xd0Y (Y:)
mkfytisskyieylkefddkvpnsedptyqnpkafigivleiqghkylapltspkkwhnn
vkesslscfklhengvpenqlglinlkfmipiieaevslldlgnmpntpykrmlykqlqf
iransdkiasksdtlrnlvlqgkmqgtcnfslleekyrdfgkeaedteege

    Sequence, based on observed residues (ATOM records):
    >2xd0Y (Y:)
mkfytisskyieylkefddkvpnsedptyqnpkafigivleiqghkylapltspkkwhnn
vkesslscfklhengvpenqlglinlkfmipiieaevslldlgnmpntpykrmlykqlqf
iransdkiasksdtlrnlvlqgkmqgtcnfslleekyrdfgk

  • Chain 'Z':
    Sequence, based on SEQRES records:
    >2xd0Z (Z:)
mkfytisskyieylkefddkvpnsedptyqnpkafigivleiqghkylapltspkkwhnn
vkesslscfklhengvpenqlglinlkfmipiieaevslldlgnmpntpykrmlykqlqf
iransdkiasksdtlrnlvlqgkmqgtcnfslleekyrdfgkeaedteege

    Sequence, based on observed residues (ATOM records):
    >2xd0Z (Z:)
mkfytisskyieylkefddkvpnsedptyqnpkafigivleiqghkylapltspkkwhnn
vkesslscfklhengvpenqlglinlkfmipiieaevslldlgnmpntpykrmlykqlqf
iransdkiasksdtlrnlvlqgkmqgtcnfslleekyrdfgk