PDB entry 2xbm

View 2xbm on RCSB PDB site
Description: Crystal structure of the dengue virus methyltransferase bound to a 5'- capped octameric RNA
Class: RNA binding protein
Keywords: flavivirus, RNA binding protein
Deposited on 2010-04-13, released 2010-09-29
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-04-04, with a file datestamp of 2012-03-30.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.205
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: nonstructural protein ns5
    Species: Dengue virus [TaxId:12637]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2xbma_
  • Chain 'B':
    Compound: nonstructural protein ns5
    Species: Dengue virus [TaxId:12637]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2xbmb_
  • Chain 'C':
    Compound: nonstructural protein ns5
    Species: Dengue virus [TaxId:12637]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2xbmc_
  • Chain 'D':
    Compound: nonstructural protein ns5
    Species: Dengue virus [TaxId:12637]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2xbmd_
  • Chain 'E':
    Compound: 5'-(*g3ap*gp*ap*ap*cp*cp*up*gp*a)-3'
  • Chain 'F':
    Compound: 5'-(*g3ap*gp*ap*ap*cp*cp*up*gp*a)-3'
  • Heterogens: SO4, SAH, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2xbmA (A:)
gtgsqgetlgekwkkklnqlsrkefdlykksgitevdrteakeglkrgetthhavsrgsa
klqwfvernmvipegrvidlgcgrggwsyycaglkkvtevrgytkggpgheepvpmstyg
wnivklmsgkdvfylppekcdtllcdigesspsptveesrtirvlkmvepwlknnqfcik
vlnpymptviehlerlqrkhggmlvrnplsrnsthemywisngtgnivssvnmvsrllln
rftmthrrptiekdvdlgagtrh

    Sequence, based on observed residues (ATOM records): (download) 
    >2xbmA (A:)
gsqgetlgekwkkklnqlsrkefdlykksgitevdrteakeglkrgetthhavsrgsakl
qwfvernmvipegrvidlgcgrggwsyycaglkkvtevrgytkggpgheepvpmstygwn
ivklmsgkdvfylppekcdtllcdigesspsptveesrtirvlkmvepwlknnqfcikvl
npymptviehlerlqrkhggmlvrnplsrnsthemywisngtgnivssvnmvsrlllnrf
tmthrrptiekdvdlgagtrh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2xbmB (B:)
gtgsqgetlgekwkkklnqlsrkefdlykksgitevdrteakeglkrgetthhavsrgsa
klqwfvernmvipegrvidlgcgrggwsyycaglkkvtevrgytkggpgheepvpmstyg
wnivklmsgkdvfylppekcdtllcdigesspsptveesrtirvlkmvepwlknnqfcik
vlnpymptviehlerlqrkhggmlvrnplsrnsthemywisngtgnivssvnmvsrllln
rftmthrrptiekdvdlgagtrh

    Sequence, based on observed residues (ATOM records): (download) 
    >2xbmB (B:)
getlgekwkkklnqlsrkefdlykksgitevdrteakeglkrgetthhavsrgsaklqwf
vernmvipegrvidlgcgrggwsyycaglkkvtevrgytkggpgheepvpmstygwnivk
lmsgkdvfylppekcdtllcdigesspsptveesrtirvlkmvepwlknnqfcikvlnpy
mptviehlerlqrkhggmlvrnplsrnsthemywisngtgnivssvnmvsrlllnrftmt
hrrptiekdvdlgagtrh

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2xbmC (C:)
gtgsqgetlgekwkkklnqlsrkefdlykksgitevdrteakeglkrgetthhavsrgsa
klqwfvernmvipegrvidlgcgrggwsyycaglkkvtevrgytkggpgheepvpmstyg
wnivklmsgkdvfylppekcdtllcdigesspsptveesrtirvlkmvepwlknnqfcik
vlnpymptviehlerlqrkhggmlvrnplsrnsthemywisngtgnivssvnmvsrllln
rftmthrrptiekdvdlgagtrh

    Sequence, based on observed residues (ATOM records): (download) 
    >2xbmC (C:)
qgetlgekwkkklnqlsrkefdlykksgitevdrteakeglkrgetthhavsrgsaklqw
fvernmvipegrvidlgcgrggwsyycaglkkvtevrgytkggpgheepvpmstygwniv
klmsgkdvfylppekcdtllcdigesspsptveesrtirvlkmvepwlknnqfcikvlnp
ymptviehlerlqrkhggmlvrnplsrnsthemywisngtgnivssvnmvsrlllnrftm
thrrptiekdvdlgagtrh

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2xbmD (D:)
gtgsqgetlgekwkkklnqlsrkefdlykksgitevdrteakeglkrgetthhavsrgsa
klqwfvernmvipegrvidlgcgrggwsyycaglkkvtevrgytkggpgheepvpmstyg
wnivklmsgkdvfylppekcdtllcdigesspsptveesrtirvlkmvepwlknnqfcik
vlnpymptviehlerlqrkhggmlvrnplsrnsthemywisngtgnivssvnmvsrllln
rftmthrrptiekdvdlgagtrh

    Sequence, based on observed residues (ATOM records): (download) 
    >2xbmD (D:)
qgetlgekwkkklnqlsrkefdlykksgitevdrteakeglkrgetthhavsrgsaklqw
fvernmvipegrvidlgcgrggwsyycaglkkvtevrgytkggpgheepvpmstygwniv
klmsgkdvfylppekcdtllcdigesspsptveesrtirvlkmvepwlknnqfcikvlnp
ymptviehlerlqrkhggmlvrnplsrnsthemywisngtgnivssvnmvsrlllnrftm
thrrptiekdvdlgagtrh

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.