PDB entry 2x7r

View 2x7r on RCSB PDB site
Description: crystal structure of a late fusion intermediate of hiv-1 gp41
Deposited on 2010-03-03, released 2010-05-26
The last revision was dated 2010-05-26, with a file datestamp of 2010-05-21.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.1788
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Transmembrane protein gp41
    Species: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 LW12.3 ISOLATE [TaxId:82834]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Transmembrane protein gp41
    Species: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 LW12.3 ISOLATE [TaxId:82834]
    Database cross-references and differences (RAF-indexed):
    • PDB 2X7R (Start-7)
    • Uniprot P04578 (8-End)
  • Chain 'C':
    Compound: Transmembrane protein gp41
    Species: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 LW12.3 ISOLATE [TaxId:82834]
    Database cross-references and differences (RAF-indexed):
    • PDB 2X7R (Start-7)
    • Uniprot P04578 (8-End)
  • Chain 'D':
    Compound: Transmembrane protein gp41
    Species: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 LW12.3 ISOLATE [TaxId:82834]
    Database cross-references and differences (RAF-indexed):
    • PDB 2X7R
    • Uniprot P04578 (Start-61)
  • Chain 'E':
    Compound: Transmembrane protein gp41
    Species: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 LW12.3 ISOLATE [TaxId:82834]
    Database cross-references and differences (RAF-indexed):
    • PDB 2X7R (Start-7)
    • Uniprot P04578 (8-End)
  • Chain 'N':
    Compound: Transmembrane protein gp41
    Species: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 LW12.3 ISOLATE [TaxId:82834]
    Database cross-references and differences (RAF-indexed):
    • PDB 2X7R
    • Uniprot P04578 (Start-61)
  • Heterogens: NA, CL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2x7rA (A:)
    gamddddkstmgaasmtltvqarqllsgivqqqnnllraieaqqhllqltvwgikqlqar
    il
    

    Sequence, based on observed residues (ATOM records):
    >2x7rA (A:)
    rqllsgivqqqnnllraieaqqhllqltvwgikqlqari
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2x7rB (B:)
    gamddddkmewdreinnytslihslieesqnqqekneqelleldkwaslwnwfnitnwlw
    yik
    

    Sequence, based on observed residues (ATOM records):
    >2x7rB (B:)
    mddddkmewdreinnytslihslieesqnqqekneqelleldk
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2x7rC (C:)
    gamddddkmewdreinnytslihslieesqnqqekneqelleldkwaslwnwfnitnwlw
    yik
    

    Sequence, based on observed residues (ATOM records):
    >2x7rC (C:)
    ddddkmewdreinnytslihslieesqnqqekneqelleldkwaslwnwfnitnwlwy
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2x7rD (D:)
    gamddddkstmgaasmtltvqarqllsgivqqqnnllraieaqqhllqltvwgikqlqar
    il
    

    Sequence, based on observed residues (ATOM records):
    >2x7rD (D:)
    smtltvqarqllsgivqqqnnllraieaqqhllqltvwgikqlqaril
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2x7rE (E:)
    gamddddkmewdreinnytslihslieesqnqqekneqelleldkwaslwnwfnitnwlw
    yik
    

    Sequence, based on observed residues (ATOM records):
    >2x7rE (E:)
    ddddkmewdreinnytslihslieesqnqqekneqelleldkwaslwnwfnitn
    

  • Chain 'N':
    Sequence, based on SEQRES records:
    >2x7rN (N:)
    gamddddkstmgaasmtltvqarqllsgivqqqnnllraieaqqhllqltvwgikqlqar
    il
    

    Sequence, based on observed residues (ATOM records):
    >2x7rN (N:)
    gaasmtltvqarqllsgivqqqnnllraieaqqhllqltvwgikqlqaril