PDB entry 2x2j

View 2x2j on RCSB PDB site
Description: crystal structure of the gracilariopsis lemaneiformis alpha- 1,4- glucan lyase with deoxynojirimycin
Deposited on 2010-01-13, released 2011-01-19
The last revision was dated 2019-02-06, with a file datestamp of 2019-02-01.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: alpha-1,4-glucan lyase isozyme 1
    Species: GRACILARIOPSIS LEMANEIFORMIS [TaxId:2782]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: alpha-1,4-glucan lyase isozyme 1
    Species: GRACILARIOPSIS LEMANEIFORMIS [TaxId:2782]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: alpha-1,4-glucan lyase isozyme 1
    Species: GRACILARIOPSIS LEMANEIFORMIS [TaxId:2782]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: alpha-1,4-glucan lyase isozyme 1
    Species: GRACILARIOPSIS LEMANEIFORMIS [TaxId:2782]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NOJ, GOL, CL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2x2jA (A:)
gstdnpdgidyktydyvgvwgfsplsntnwfaagsstpggitdwtatmnvnfdridnpsi
tvqhpvqvqvtsynnnsyrvrfnpdgpirdvtrgpilkqqldwirtqelsegcdpgmtft
segfltfetkdlsviiygnfktrvtrksdgkvimendevgtassgnkcrglmfvdrlygn
aiasvnknfrndavkqegfygagevnckyqdtyilertgiamtnynydnlnynqwdlrpp
hhdgalnpdyyipmyyaapwlivngcagtseqysygwfmdnvsqsymntgdttwnsgqed
laymgaqygpfdqhfvygagggmecvvtafsllqgkefenqvlnkrsvmppkyvfgffqg
vfgtssllrahmpagennisveeivegyqnnnfpfeglavdvdmqdnlrvfttkgefwta
nrvgtggdpnnrsvfewahdkglvcqtnitcflrndnegqdyevnqtlrerqlytkndsl
tgtdfgmtddgpsdayighldygggvecdalfpdwgrpdvaewwgnnykklfsigldfvw
qdmtvpammphkigddinvkpdgnwpnaddpsngqynwktyhpqvlvtdmryenhgrepm
vtqrnihaytlcestrkegivenadtltkfrrsyiisrggyignqhfggmwvgdnsttsn
yiqmmianninmnmsclplvgsdiggftsydnenqrtpctgdlmvryvqagcllpwfrnh
ydrwieskdhgkdyqelymypnemdtlrkfvefryrwqevlytamyqnaafgkpiikaas
mynndsnvrraqndhfllgghdgyrilcapvvwensterelylpvltqwykfgpdfdtkp
legamnggdriynypvpqsespifvregailptrytlngenkslntytdedplvfevfpl
gnnradgmcylddggvttnaedngkfsvvkvaaeqdggtetitftndcyeyvfggpfyvr
vrgaqspsnihvssgagsqdmkvssatsraalfndgengdfwvdqetdslwlklpnvvlp
davitit

    Sequence, based on observed residues (ATOM records):
    >2x2jA (A:)
tdnpdgidyktydyvgvwgfsplsntnwfaagsstpggitdwtatmnvnfdridnpsitv
qhpvqvqvtsynnnsyrvrfnpdgpirdvtrgpilkqqldwirtqelsegcdpgmtftse
gfltfetkdlsviiygnfktrvtrksdgkvimendevgtassgnkcrglmfvdrlygnai
asvnknfrndavkqegfygagevnckyqdtyilertgiamtnynydnlnynqwdlrpphh
dgalnpdyyipmyyaapwlivngcagtseqysygwfmdnvsqsymntgdttwnsgqedla
ymgaqygpfdqhfvygagggmecvvtafsllqgkefenqvlnkrsvmppkyvfgffqgvf
gtssllrahmpagennisveeivegyqnnnfpfeglavdvdmqdnlrvfttkgefwtanr
vgtggdpnnrsvfewahdkglvcqtnitcflrndnegqdyevnqtlrerqlytkndsltg
tdfgmtddgpsdayighldygggvecdalfpdwgrpdvaewwgnnykklfsigldfvwqd
mtvpammphkigddinvkpdgnwpnaddpsngqynwktyhpqvlvtdmryenhgrepmvt
qrnihaytlcestrkegivenadtltkfrrsyiisrggyignqhfggmwvgdnsttsnyi
qmmianninmnmsclplvgsdiggftsydnenqrtpctgdlmvryvqagcllpwfrnhyd
rwieskdhgkdyqelymypnemdtlrkfvefryrwqevlytamyqnaafgkpiikaasmy
nndsnvrraqndhfllgghdgyrilcapvvwensterelylpvltqwykfgpdfdtkple
gamnggdriynypvpqsespifvregailptrytlngenkslntytdedplvfevfplgn
nradgmcylddggvttnaedngkfsvvkvaaeqdggtetitftndcyeyvfggpfyvrvr
gaqspsnihvssgagsqdmkvssatsraalfndgengdfwvdqetdslwlklpnvvlpda
vitit

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2x2jB (B:)
gstdnpdgidyktydyvgvwgfsplsntnwfaagsstpggitdwtatmnvnfdridnpsi
tvqhpvqvqvtsynnnsyrvrfnpdgpirdvtrgpilkqqldwirtqelsegcdpgmtft
segfltfetkdlsviiygnfktrvtrksdgkvimendevgtassgnkcrglmfvdrlygn
aiasvnknfrndavkqegfygagevnckyqdtyilertgiamtnynydnlnynqwdlrpp
hhdgalnpdyyipmyyaapwlivngcagtseqysygwfmdnvsqsymntgdttwnsgqed
laymgaqygpfdqhfvygagggmecvvtafsllqgkefenqvlnkrsvmppkyvfgffqg
vfgtssllrahmpagennisveeivegyqnnnfpfeglavdvdmqdnlrvfttkgefwta
nrvgtggdpnnrsvfewahdkglvcqtnitcflrndnegqdyevnqtlrerqlytkndsl
tgtdfgmtddgpsdayighldygggvecdalfpdwgrpdvaewwgnnykklfsigldfvw
qdmtvpammphkigddinvkpdgnwpnaddpsngqynwktyhpqvlvtdmryenhgrepm
vtqrnihaytlcestrkegivenadtltkfrrsyiisrggyignqhfggmwvgdnsttsn
yiqmmianninmnmsclplvgsdiggftsydnenqrtpctgdlmvryvqagcllpwfrnh
ydrwieskdhgkdyqelymypnemdtlrkfvefryrwqevlytamyqnaafgkpiikaas
mynndsnvrraqndhfllgghdgyrilcapvvwensterelylpvltqwykfgpdfdtkp
legamnggdriynypvpqsespifvregailptrytlngenkslntytdedplvfevfpl
gnnradgmcylddggvttnaedngkfsvvkvaaeqdggtetitftndcyeyvfggpfyvr
vrgaqspsnihvssgagsqdmkvssatsraalfndgengdfwvdqetdslwlklpnvvlp
davitit

    Sequence, based on observed residues (ATOM records):
    >2x2jB (B:)
tdnpdgidyktydyvgvwgfsplsntnwfaagsstpggitdwtatmnvnfdridnpsitv
qhpvqvqvtsynnnsyrvrfnpdgpirdvtrgpilkqqldwirtqelsegcdpgmtftse
gfltfetkdlsviiygnfktrvtrksdgkvimendevgtassgnkcrglmfvdrlygnai
asvnknfrndavkqegfygagevnckyqdtyilertgiamtnynydnlnynqwdlrpphh
dgalnpdyyipmyyaapwlivngcagtseqysygwfmdnvsqsymntgdttwnsgqedla
ymgaqygpfdqhfvygagggmecvvtafsllqgkefenqvlnkrsvmppkyvfgffqgvf
gtssllrahmpagennisveeivegyqnnnfpfeglavdvdmqdnlrvfttkgefwtanr
vgtggdpnnrsvfewahdkglvcqtnitcflrndnegqdyevnqtlrerqlytkndsltg
tdfgmtddgpsdayighldygggvecdalfpdwgrpdvaewwgnnykklfsigldfvwqd
mtvpammphkigddinvkpdgnwpnaddpsngqynwktyhpqvlvtdmryenhgrepmvt
qrnihaytlcestrkegivenadtltkfrrsyiisrggyignqhfggmwvgdnsttsnyi
qmmianninmnmsclplvgsdiggftsydnenqrtpctgdlmvryvqagcllpwfrnhyd
rwieskdhgkdyqelymypnemdtlrkfvefryrwqevlytamyqnaafgkpiikaasmy
nndsnvrraqndhfllgghdgyrilcapvvwensterelylpvltqwykfgpdfdtkple
gamnggdriynypvpqsespifvregailptrytlngenkslntytdedplvfevfplgn
nradgmcylddggvttnaedngkfsvvkvaaeqdggtetitftndcyeyvfggpfyvrvr
gaqspsnihvssgagsqdmkvssatsraalfndgengdfwvdqetdslwlklpnvvlpda
vitit

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2x2jC (C:)
gstdnpdgidyktydyvgvwgfsplsntnwfaagsstpggitdwtatmnvnfdridnpsi
tvqhpvqvqvtsynnnsyrvrfnpdgpirdvtrgpilkqqldwirtqelsegcdpgmtft
segfltfetkdlsviiygnfktrvtrksdgkvimendevgtassgnkcrglmfvdrlygn
aiasvnknfrndavkqegfygagevnckyqdtyilertgiamtnynydnlnynqwdlrpp
hhdgalnpdyyipmyyaapwlivngcagtseqysygwfmdnvsqsymntgdttwnsgqed
laymgaqygpfdqhfvygagggmecvvtafsllqgkefenqvlnkrsvmppkyvfgffqg
vfgtssllrahmpagennisveeivegyqnnnfpfeglavdvdmqdnlrvfttkgefwta
nrvgtggdpnnrsvfewahdkglvcqtnitcflrndnegqdyevnqtlrerqlytkndsl
tgtdfgmtddgpsdayighldygggvecdalfpdwgrpdvaewwgnnykklfsigldfvw
qdmtvpammphkigddinvkpdgnwpnaddpsngqynwktyhpqvlvtdmryenhgrepm
vtqrnihaytlcestrkegivenadtltkfrrsyiisrggyignqhfggmwvgdnsttsn
yiqmmianninmnmsclplvgsdiggftsydnenqrtpctgdlmvryvqagcllpwfrnh
ydrwieskdhgkdyqelymypnemdtlrkfvefryrwqevlytamyqnaafgkpiikaas
mynndsnvrraqndhfllgghdgyrilcapvvwensterelylpvltqwykfgpdfdtkp
legamnggdriynypvpqsespifvregailptrytlngenkslntytdedplvfevfpl
gnnradgmcylddggvttnaedngkfsvvkvaaeqdggtetitftndcyeyvfggpfyvr
vrgaqspsnihvssgagsqdmkvssatsraalfndgengdfwvdqetdslwlklpnvvlp
davitit

    Sequence, based on observed residues (ATOM records):
    >2x2jC (C:)
tdnpdgidyktydyvgvwgfsplsntnwfaagsstpggitdwtatmnvnfdridnpsitv
qhpvqvqvtsynnnsyrvrfnpdgpirdvtrgpilkqqldwirtqelsegcdpgmtftse
gfltfetkdlsviiygnfktrvtrksdgkvimendevgtassgnkcrglmfvdrlygnai
asvnknfrndavkqegfygagevnckyqdtyilertgiamtnynydnlnynqwdlrpphh
dgalnpdyyipmyyaapwlivngcagtseqysygwfmdnvsqsymntgdttwnsgqedla
ymgaqygpfdqhfvygagggmecvvtafsllqgkefenqvlnkrsvmppkyvfgffqgvf
gtssllrahmpagennisveeivegyqnnnfpfeglavdvdmqdnlrvfttkgefwtanr
vgtggdpnnrsvfewahdkglvcqtnitcflrndnegqdyevnqtlrerqlytkndsltg
tdfgmtddgpsdayighldygggvecdalfpdwgrpdvaewwgnnykklfsigldfvwqd
mtvpammphkigddinvkpdgnwpnaddpsngqynwktyhpqvlvtdmryenhgrepmvt
qrnihaytlcestrkegivenadtltkfrrsyiisrggyignqhfggmwvgdnsttsnyi
qmmianninmnmsclplvgsdiggftsydnenqrtpctgdlmvryvqagcllpwfrnhyd
rwieskdhgkdyqelymypnemdtlrkfvefryrwqevlytamyqnaafgkpiikaasmy
nndsnvrraqndhfllgghdgyrilcapvvwensterelylpvltqwykfgpdfdtkple
gamnggdriynypvpqsespifvregailptrytlngenkslntytdedplvfevfplgn
nradgmcylddggvttnaedngkfsvvkvaaeqdggtetitftndcyeyvfggpfyvrvr
gaqspsnihvssgagsqdmkvssatsraalfndgengdfwvdqetdslwlklpnvvlpda
vitit

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2x2jD (D:)
gstdnpdgidyktydyvgvwgfsplsntnwfaagsstpggitdwtatmnvnfdridnpsi
tvqhpvqvqvtsynnnsyrvrfnpdgpirdvtrgpilkqqldwirtqelsegcdpgmtft
segfltfetkdlsviiygnfktrvtrksdgkvimendevgtassgnkcrglmfvdrlygn
aiasvnknfrndavkqegfygagevnckyqdtyilertgiamtnynydnlnynqwdlrpp
hhdgalnpdyyipmyyaapwlivngcagtseqysygwfmdnvsqsymntgdttwnsgqed
laymgaqygpfdqhfvygagggmecvvtafsllqgkefenqvlnkrsvmppkyvfgffqg
vfgtssllrahmpagennisveeivegyqnnnfpfeglavdvdmqdnlrvfttkgefwta
nrvgtggdpnnrsvfewahdkglvcqtnitcflrndnegqdyevnqtlrerqlytkndsl
tgtdfgmtddgpsdayighldygggvecdalfpdwgrpdvaewwgnnykklfsigldfvw
qdmtvpammphkigddinvkpdgnwpnaddpsngqynwktyhpqvlvtdmryenhgrepm
vtqrnihaytlcestrkegivenadtltkfrrsyiisrggyignqhfggmwvgdnsttsn
yiqmmianninmnmsclplvgsdiggftsydnenqrtpctgdlmvryvqagcllpwfrnh
ydrwieskdhgkdyqelymypnemdtlrkfvefryrwqevlytamyqnaafgkpiikaas
mynndsnvrraqndhfllgghdgyrilcapvvwensterelylpvltqwykfgpdfdtkp
legamnggdriynypvpqsespifvregailptrytlngenkslntytdedplvfevfpl
gnnradgmcylddggvttnaedngkfsvvkvaaeqdggtetitftndcyeyvfggpfyvr
vrgaqspsnihvssgagsqdmkvssatsraalfndgengdfwvdqetdslwlklpnvvlp
davitit

    Sequence, based on observed residues (ATOM records):
    >2x2jD (D:)
tdnpdgidyktydyvgvwgfsplsntnwfaagsstpggitdwtatmnvnfdridnpsitv
qhpvqvqvtsynnnsyrvrfnpdgpirdvtrgpilkqqldwirtqelsegcdpgmtftse
gfltfetkdlsviiygnfktrvtrksdgkvimendevgtassgnkcrglmfvdrlygnai
asvnknfrndavkqegfygagevnckyqdtyilertgiamtnynydnlnynqwdlrpphh
dgalnpdyyipmyyaapwlivngcagtseqysygwfmdnvsqsymntgdttwnsgqedla
ymgaqygpfdqhfvygagggmecvvtafsllqgkefenqvlnkrsvmppkyvfgffqgvf
gtssllrahmpagennisveeivegyqnnnfpfeglavdvdmqdnlrvfttkgefwtanr
vgtggdpnnrsvfewahdkglvcqtnitcflrndnegqdyevnqtlrerqlytkndsltg
tdfgmtddgpsdayighldygggvecdalfpdwgrpdvaewwgnnykklfsigldfvwqd
mtvpammphkigddinvkpdgnwpnaddpsngqynwktyhpqvlvtdmryenhgrepmvt
qrnihaytlcestrkegivenadtltkfrrsyiisrggyignqhfggmwvgdnsttsnyi
qmmianninmnmsclplvgsdiggftsydnenqrtpctgdlmvryvqagcllpwfrnhyd
rwieskdhgkdyqelymypnemdtlrkfvefryrwqevlytamyqnaafgkpiikaasmy
nndsnvrraqndhfllgghdgyrilcapvvwensterelylpvltqwykfgpdfdtkple
gamnggdriynypvpqsespifvregailptrytlngenkslntytdedplvfevfplgn
nradgmcylddggvttnaedngkfsvvkvaaeqdggtetitftndcyeyvfggpfyvrvr
gaqspsnihvssgagsqdmkvssatsraalfndgengdfwvdqetdslwlklpnvvlpda
vitit