PDB entry 2wym

View 2wym on RCSB PDB site
Description: structure of a metallo-b-lactamase
Deposited on 2009-11-16, released 2010-04-14
The last revision was dated 2010-05-19, with a file datestamp of 2010-05-14.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.21
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: l-ascorbate-6-phosphate lactonase ulag
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P39300 (0-End)
    • PDB 2WYM
  • Chain 'B':
    Compound: l-ascorbate-6-phosphate lactonase ulag
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P39300 (0-End)
    • PDB 2WYM
  • Chain 'C':
    Compound: l-ascorbate-6-phosphate lactonase ulag
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P39300 (0-End)
    • PDB 2WYM
  • Chain 'D':
    Compound: l-ascorbate-6-phosphate lactonase ulag
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P39300 (0-End)
    • PDB 2WYM
  • Chain 'E':
    Compound: l-ascorbate-6-phosphate lactonase ulag
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P39300 (0-End)
    • PDB 2WYM
  • Chain 'F':
    Compound: l-ascorbate-6-phosphate lactonase ulag
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P39300 (0-End)
    • PDB 2WYM
  • Heterogens: MN, GOL, FLC, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2wymA (A:)
    mskvksitreswilstfpewgswlneeieqeqvapgtfamwwlgctgiwlkseggtnvcv
    dfwcgtgkqshgnplmkqghqmqrmagvkklqpnlrttpfvldpfairqidavlathdhn
    dhidvnvaaavmqncaddvpfigpktcvdlwigwgvpkercivvkpgdvvkvkdieihal
    dafdrtalitlpadqkaagvlpdgmddravnylfktpggslyhsgdshysnyyakhgneh
    qidvalgsygenprgitdkmtsadmlrmgealnakvvipfhhdiwsnfqadpqeirvlwe
    mkkdrlkygfkpfiwqvggkftwpldkdnfeyhyprgfddcftiepdlpfksflhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >2wymA (A:)
    mskvksitreswilstfpewgswlneeieqeqvapgtfamwwlgctgiwlkseggtnvcv
    dfwcgtgkqshgklqpnlrttpfvldpfairqidavlathdhndhidvnvaaavmqncad
    dvpfigpktcvdlwigwgvpkercivvkpgdvvkvkdieihaldafdmddravnylfktp
    ggslyhsgdshysnyyakhgnehqidvalgsygenprgitdkmtsadmlrmgealnakvv
    ipfhhdiwsnfqadpqeirvlwemkkdrlkygfkpfiwqvggkftwpldkdnfeyhyprg
    fdd
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2wymB (B:)
    mskvksitreswilstfpewgswlneeieqeqvapgtfamwwlgctgiwlkseggtnvcv
    dfwcgtgkqshgnplmkqghqmqrmagvkklqpnlrttpfvldpfairqidavlathdhn
    dhidvnvaaavmqncaddvpfigpktcvdlwigwgvpkercivvkpgdvvkvkdieihal
    dafdrtalitlpadqkaagvlpdgmddravnylfktpggslyhsgdshysnyyakhgneh
    qidvalgsygenprgitdkmtsadmlrmgealnakvvipfhhdiwsnfqadpqeirvlwe
    mkkdrlkygfkpfiwqvggkftwpldkdnfeyhyprgfddcftiepdlpfksflhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >2wymB (B:)
    mskvksitreswilstfpewgswlneeieqeqvapgtfamwwlgctgiwlkseggtnvcv
    dfwcgtgkqshglqpnlrttpfvldpfairqidavlathdhndhidvnvaaavmqncadd
    vpfigpktcvdlwigwgvpkercivvkpgdvvkvkdieihaldafdgmddravnylfktp
    ggslyhsgdshysnyyakhgnehqidvalgsygenprgitdkmtsadmlrmgealnakvv
    ipfhhdiwsnfqadpqeirvlwemkkdrlkygfkpfiwqvggkftwpldkdnfeyhyprg
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2wymC (C:)
    mskvksitreswilstfpewgswlneeieqeqvapgtfamwwlgctgiwlkseggtnvcv
    dfwcgtgkqshgnplmkqghqmqrmagvkklqpnlrttpfvldpfairqidavlathdhn
    dhidvnvaaavmqncaddvpfigpktcvdlwigwgvpkercivvkpgdvvkvkdieihal
    dafdrtalitlpadqkaagvlpdgmddravnylfktpggslyhsgdshysnyyakhgneh
    qidvalgsygenprgitdkmtsadmlrmgealnakvvipfhhdiwsnfqadpqeirvlwe
    mkkdrlkygfkpfiwqvggkftwpldkdnfeyhyprgfddcftiepdlpfksflhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >2wymC (C:)
    mskvksitreswilstfpewgswlneeieqeqvapgtfamwwlgctgiwlkseggtnvcv
    dfwcgtgkqshgqpnlrttpfvldpfairqidavlathdhndhidvnvaaavmqncaddv
    pfigpktcvdlwigwgvpkercivvkpgdvvkvkdieihaldafgmddravnylfktpgg
    slyhsgdshysnyyakhgnehqidvalgsygenprgitdkmtsadmlrmgealnakvvip
    fhhdiwsnfqadpqeirvlwemkkdrlkygfkpfiwqvggkftwpldkdnfeyhyprg
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2wymD (D:)
    mskvksitreswilstfpewgswlneeieqeqvapgtfamwwlgctgiwlkseggtnvcv
    dfwcgtgkqshgnplmkqghqmqrmagvkklqpnlrttpfvldpfairqidavlathdhn
    dhidvnvaaavmqncaddvpfigpktcvdlwigwgvpkercivvkpgdvvkvkdieihal
    dafdrtalitlpadqkaagvlpdgmddravnylfktpggslyhsgdshysnyyakhgneh
    qidvalgsygenprgitdkmtsadmlrmgealnakvvipfhhdiwsnfqadpqeirvlwe
    mkkdrlkygfkpfiwqvggkftwpldkdnfeyhyprgfddcftiepdlpfksflhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >2wymD (D:)
    mskvksitreswilstfpewgswlneeieqeqvapgtfamwwlgctgiwlkseggtnvcv
    dfwcgtgkqshgqpnlrttpfvldpfairqidavlathdhndhidvnvaaavmqncaddv
    pfigpktcvdlwigwgvpkercivvkpgdvvkvkdieihaldafgmddravnylfktpgg
    slyhsgdshysnyyakhgnehqidvalgsygenprgitdkmtsadmlrmgealnakvvip
    fhhdiwsnfqadpqeirvlwemkkdrlkygfkpfiwqvggkftwpldkdnfeyhyprgfd
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2wymE (E:)
    mskvksitreswilstfpewgswlneeieqeqvapgtfamwwlgctgiwlkseggtnvcv
    dfwcgtgkqshgnplmkqghqmqrmagvkklqpnlrttpfvldpfairqidavlathdhn
    dhidvnvaaavmqncaddvpfigpktcvdlwigwgvpkercivvkpgdvvkvkdieihal
    dafdrtalitlpadqkaagvlpdgmddravnylfktpggslyhsgdshysnyyakhgneh
    qidvalgsygenprgitdkmtsadmlrmgealnakvvipfhhdiwsnfqadpqeirvlwe
    mkkdrlkygfkpfiwqvggkftwpldkdnfeyhyprgfddcftiepdlpfksflhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >2wymE (E:)
    mskvksitreswilstfpewgswlneeieqeqvapgtfamwwlgctgiwlkseggtnvcv
    dfwcgtgkqshglqpnlrttpfvldpfairqidavlathdhndhidvnvaaavmqncadd
    vpfigpktcvdlwigwgvpkercivvkpgdvvkvkdieihaldafdmddravnylfktpg
    gslyhsgdshysnyyakhgnehqidvalgsygenprgitdkmtsadmlrmgealnakvvi
    pfhhdiwsnfqadpqeirvlwemkkdrlkygfkpfiwqvggkftwpldkdnfeyhyprgf
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2wymF (F:)
    mskvksitreswilstfpewgswlneeieqeqvapgtfamwwlgctgiwlkseggtnvcv
    dfwcgtgkqshgnplmkqghqmqrmagvkklqpnlrttpfvldpfairqidavlathdhn
    dhidvnvaaavmqncaddvpfigpktcvdlwigwgvpkercivvkpgdvvkvkdieihal
    dafdrtalitlpadqkaagvlpdgmddravnylfktpggslyhsgdshysnyyakhgneh
    qidvalgsygenprgitdkmtsadmlrmgealnakvvipfhhdiwsnfqadpqeirvlwe
    mkkdrlkygfkpfiwqvggkftwpldkdnfeyhyprgfddcftiepdlpfksflhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >2wymF (F:)
    mskvksitreswilstfpewgswlneeieqeqvapgtfamwwlgctgiwlkseggtnvcv
    dfwcgtgkqshgklqpnlrttpfvldpfairqidavlathdhndhidvnvaaavmqncad
    dvpfigpktcvdlwigwgvpkercivvkpgdvvkvkdieihaldafdrddravnylfktp
    ggslyhsgdshysnyyakhgnehqidvalgsygenprgitdkmtsadmlrmgealnakvv
    ipfhhdiwsnfqadpqeirvlwemkkdrlkygfkpfiwqvggkftwpldkdnfeyhyprg
    f